BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476449
Length=1861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73180.1 | Symbols: | Eukaryotic translation initiation fac... 2750 0.0
> AT1G73180.1 | Symbols: | Eukaryotic translation initiation factor
eIF2A family protein | chr1:27517916-27521649 FORWARD
LENGTH=1912
Length=1912
Score = 2750 bits (1489), Expect = 0.0
Identities = 1714/1819 (94%), Gaps = 29/1819 (2%)
Strand=Plus/Plus
Query 63 CCGCCGATTACCGGATCGTCTCTGTTATTGCGTGCTTCTTTTAGGTGTCTCAAGTAAGCA 122
||| |||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 94 CCGTCGATTACCGGATCGTCTCCGTTATTGCGTGCTTCATTTAGGTGTATCAAGTAAGCA 153
Query 123 ATGAGTTCTTCACCGTCGTTGGAGATTTTAGTTAGAGAAGCTGAAGGTTTCACTGTATGG 182
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 154 ATGAGTTCTTCACCGTCGTTGGAGATTTTAGTTAGAGAAGCTGAAGGCTTCACTGTGTGG 213
Query 183 AATGGTCCTCCATTCACTAATGGCCAGCCCACTCTCAAGCTTGAACGAGTTTCGTGTTCC 242
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 214 AATGGTCCTCCATTTACTAATGGCCAGCCCACTCTCAAGCTTGAACGAGTTTCATGCTCT 273
Query 243 AACACTAAGTTCAGTGTTGATGGATCCAAGTTAATGGCGATGAAATCAGATGGAATTATT 302
||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |||||
Sbjct 274 AACACGAAGTTCAGTGTTGATGGATCGAAGTTAATGGCGATGAAATCTGATGGAGTTATT 333
Query 303 AGTATCTATGATGCCACCAGCTTGACTGTAGTGCGGTCGTTCCCTATAGCAAATGTTACG 362
|||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||
Sbjct 334 AGTATCTATGATGCCACCAGCTTGACAGAAGTGCGGTCATTCACTATAGCAAATGTTACA 393
Query 363 GCTGCTGAGCTATCTCCATGTGGGACTTATCTTCAGACTTTTCAAAAACCCACTACTCCA 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GCTGCTGAGCTATCTCCATGTGGGACTTATCTTCAGACTTTTCAAAAACCCACTACTCCC 453
Query 423 CAGGATAAAAACGTCTCCATTTGGAATATTGAGACTGGGGATCTAGCACACAGTCATTAC 482
|| || || || |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 454 CAAGAGAAGAATGTCTCCATTTGGAATACTGAGACAGGGGATCTAGCACACAGTCATTAC 513
Query 483 CAAAAATCCATTACTAAAGCCTCGTGGCCATCAATTCGCTTCTGTCTTGATGAATCTTCT 542
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 514 CAAAAATCCATTACTAAAGCCTCATGGCCATCAATTCGCTTCTGTCCTGATGAATCTTCT 573
Query 543 GCATGCCGGTTAGCTACAAATGAGATCCAATTCTTTGACCCGAAAGATTTCTCAAAAGGA 602
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 574 GCGTGCCGGTTAGCTACAAATGAGGTCCAATTCTTTGACCCGAAAGATTTCTCGAAAGGA 633
Query 603 ATAACATCCCGGATCAGAGTTCCTGGGGTTGCTGCATTTGAGCTTTCTAAAACGCCAGCT 662
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 634 ATAACATCCCGGATCAGAGTTCCTGGGATTGCTGCATTTGAGCTTTCTAAAACGCCAGCT 693
Query 663 TCCCATGTTGCTGTGTTTGTTCCAGAATCAAAGGGGAGTCCAGGCAGTGTCCAGATATTT 722
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 694 TCCCATGTTGCTGTGTTTGTTCCAGAATCAAAGGGGAGTCCAGGCAGTGTCCAGATTTTT 753
Query 723 GGATGTGGGGAAGGATTGCAGAGTCAGCCAAGTGCTCGACGTAGCTTTTTCCGATGTTCT 782
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 754 GGATGTGGGGAAGAATTGCAGAGCCAGCCAAGTGCTCGACGTAGCTTTTTCCGATGTTCC 813
Query 783 TCTGTGCAGTTTAGTTGGAACCATGGTTCCACTGGACTCCTAGTGGTTGTACAATCAGAT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TCTGTGCAGTTTAGTTGGAACCATGGTTCCACTGGACTCCTAGTGGTTGTACAATCAGAT 873
Query 843 GTTGACAAGACCAACCAAAGTTACTATGGGGAAACGAAGCTACACTACCTTACAATAGAC 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GTTGACAAGACCAACCAAAGTTACTATGGGGAAACGAAGCTACACTACCTTACAATAGAC 933
Query 903 GGCACACATGAGGGCCTTGTTCCATTACGTAAAGAAGGACCAGTTCATGATGTTCAGTGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 GGCACACATGAGGGCCTTGTTCCATTACGTAAAGAAGGACCAGTTCATGATGTTCAGTGG 993
Query 963 TCCTTTTCGGGCTCAGAGTTTGCAGTTGTATATGGCTTTATGCCTGCTTGTGTGACAATC 1022
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 994 TCCTTTTCGGGTTCAGAGTTTGCTGTTGTATATGGCTTTATGCCTGCTTGTGTGACAATC 1053
Query 1023 TTTGACAAGAATTGCAAACCCTTGATGGAAATTGGCGAAGGTCCTTATAACACTCTTCGA 1082
|||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1054 TTTGACAAGAATTGTAAACCATTGATGGAACTTGGCGAAGGTCCTTATAACACTCTTCGA 1113
Query 1083 TGGAACCCAAAAGGGAGAGTTTTATGTGTGGCTGGATTCGGTAACTTACCTGGTGATATG 1142
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1114 TGGAACCCAAAAGGGAGAGTTTTATGTGTGGCTGGATTCGGTAACTTGCCTGGTGATATG 1173
Query 1143 GCCTTCTGGGATGTTGTCAACAAGAAGCAGCTAGGAAGTAATAAAGCCGAGTGGTCTGTG 1202
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GCCTTCTGGGATGTTGTAAATAAGAAGCAGCTAGGAAGTAATAAAGCCGAGTGGTCTGTG 1233
Query 1203 ACAAGTGAATGGTCTCCAGATGGGCGTTATTTCTTGACTGCCTCAACTGCACCAAGACGT 1262
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1234 ACAAGTGAATGGTCTCCAGACGGGCGTTATTTCTTGACTGCCTCAACAGCACCAAGACGT 1293
Query 1263 CAAATTGACAATGGGATGAAAATCTTCAACTACGACGGAAAGCGTTACTT-TAAGAAGAT 1321
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1294 CAAATTGACAATGGGATGAAAATCTTCAACTACGACGGAAAGCGTTA-TTATAAGAAGAT 1352
Query 1322 GTTTGAGAGGCTGTATCAGGCTGAGTGGAAACCAGAGTCTCCGGACAGGTTCGGTGATAT 1381
|||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1353 GTTTGAGAGGCTGTATCAGGCTGAATGGAAACCAGAGTCTCCAGAGAGGTTCGGTGACAT 1412
Query 1382 CAGTGAACTTATCAAGTCAGTTGAATCATTGAAACTCGGCGAGGGCAAATCGCAAGGACA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 CAGTGAACTTATCAAGTCAGTTGAATCATTGAAACTCGGCGAGGGCAAATCGCAAGGACA 1472
Query 1442 AGGATCGGCTCAGAAGAAAGCTATTGCTCCCAACCCTATTGCACAAAAACCGGCTGCATA 1501
|||||| |||||||||||| ||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 1473 AGGATCAGCTCAGAAGAAAACTATTGCCCCCAATCCTATTGCACAGAAACCGGCCGCATA 1532
Query 1502 TCGACCTCCGCATGCTAAGCACGCAGCTGCTGTTCAAGCTGAGTTGCTTGGAGTAAGCAC 1561
||||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||||
Sbjct 1533 TCGACCTCCGCATGCTAAGCATGCAGCTGCTGTTCAAGCCGAGTTACTTGGAATAAGCAC 1592
Query 1562 AGCAGGAGAGATGAGCAAGAACGCTCTTAAAAACAAGAAGAAGAGGGAGAAGAAGAAAGC 1621
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1593 AACAGGAGAGATGAGCAAGAACGCTCTTAAAAACAAGAAGAAGAGGGAGAATAAGAAAGC 1652
Query 1622 AGCCGAGGCTGC---TGCTGCTTCTGGAGCTAAC---GCCTGATCGAA-AAAGTCACCAC 1674
|| | |||||| ||||||||||||| ||||| ||||||| ||| ||| |||| ||
Sbjct 1653 GGCTGCGGCTGCGGCTGCTGCTTCTGGATCTAACAACGCCTGATTGAAGAAA-TCAC-AC 1710
Query 1675 TCCTATATCAAATTCAATGGCGATCACAGTTTTGAGATTCCTTTGATGGTAATAAAGATT 1734
||| |||||||||||||||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 1711 TCCGATATCAAATTCAATGGAGATCACAGTTTTGAAATTCATTTGATGGTAATAAAGATT 1770
Query 1735 CTATAGAAAAGGCAGAAAGCATTATGTAAACAGTTGTTTTTCATTTTGTCAAACATTTTT 1794
|||||||| | |||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1771 CTATAGAAGA--CAGAAAACATTATGTAAACAGTTGTTTTTT-TTTTGTCAAACATTTTT 1827
Query 1795 GTTGTCAGTTGTTCACCGCCAAAATCA---GAAG---AA-A-G---GA-GCCGAAATTTT 1842
|||||||||| | |||||||||||| |||| || | | || |||||||||||
Sbjct 1828 GTTGTCAGTTA--C-CCGCCAAAATCATTTGAAGCCTAAGAAGAAAGAAGCCGAAATTTT 1884
Query 1843 AGCAGGTTAAAAGTGAAAA 1861
| |||||||||||||||||
Sbjct 1885 ACCAGGTTAAAAGTGAAAA 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92118000075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5