BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476450
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73190.1 | Symbols: ALPHA-TIP, TIP3;1 | Aquaporin-like super... 1509 0.0
> AT1G73190.1 | Symbols: ALPHA-TIP, TIP3;1 | Aquaporin-like superfamily
protein | chr1:27521944-27523332 FORWARD LENGTH=1179
Length=1179
Score = 1509 bits (817), Expect = 0.0
Identities = 917/965 (95%), Gaps = 8/965 (1%)
Strand=Plus/Plus
Query 145 TGTTTGATCAT-ATGGCAACATCAGCTCGTAGAGCATACGGTTTCGGTAGAGCCGATGAG 203
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TGTTTGATCATAATGGCAACATCAGCTCGTAGAGCATACGGTTTCGGTAGAGCCGATGAG 259
Query 204 GCTACACACCCTGACTCCATTAGAGCAACTTTAGCTGAGTTCCTCTCCACTTTTGTCTTC 263
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 260 GCTACACACCCTGACTCCATTAGAGCAACTTTAGCTGAGTTTCTCTCCACTTTTGTCTTC 319
Query 264 GTCTTTGCAGCTGAAGGCTCTATTCTCTCCCTCGATAAGTTGTATTGGGACCATGCGGCT 323
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 320 GTCTTTGCAGCTGAAGGCTCTATCCTCTCTCTCGATAAGTTGTATTGGGAACATGCGGCT 379
Query 324 CATGCGGGGACAAACACACCAGGAGGACTGATTTTAGTGGCCTTGGCTCATGCGTTTGCT 383
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 380 CATGCGGGGACAAACACACCAGGAGGGCTGATTTTAGTAGCGTTGGCTCATGCGTTTGCT 439
Query 384 CTGTTTGCTGCTGTTTCAGCAGCCATCAATGTCTCGGGTGGACACGTAAACCCGGCAGTC 443
|||||||||||||||||||||||||| |||||||| || |||||||| ||||||||||||
Sbjct 440 CTGTTTGCTGCTGTTTCAGCAGCCATTAATGTCTCCGGCGGACACGTTAACCCGGCAGTC 499
Query 444 ACTTTTGGTGCTCTTATTGGAGGCAGACTCT-CAGCGATCCGTGCCATCTACTATTGGGT 502
||||||||||||||| ||||||||||| | | |||||||||| ||||||||||| ||| |
Sbjct 500 ACTTTTGGTGCTCTTGTTGGAGGCAGAGT-TACAGCGATCCGCGCCATCTACTACTGGAT 558
Query 503 CGCTCAGCTTCTTGGAGCCATCCTCGCTTGTCTCTTGTTAAGACTCGCAACAAACGGCAT 562
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 559 CGCTCAGCTTCTTGGAGCCATCCTCGCTTGTCTCTTGTTAAGGCTCACAACAAACGGCAT 618
Query 563 GAGACCAGTTGGTTTCCGTGTAGCATCAGGTGTTGGAGCGGTTAATGGACTTGTATTAGA 622
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GAGACCAGTTGGTTTCCGTCTAGCATCAGGTGTTGGAGCGGTTAATGGACTTGTATTAGA 678
Query 623 GATCATTTTAACATTTGGCTTAGTGTACGTCGTGTATTCGACTTTGATTGATCCAAAGCG 682
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 679 GATCATTTTAACATTTGGCTTAGTCTACGTAGTGTATTCCACTTTGATTGATCCAAAACG 738
Query 683 TGGAAGCCTCGGGATCATAGCACCACTTGCAATCGGACTCATAGTTGGGGCAAACATCTT 742
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 739 TGGAAGCCTCGGGATCATAGCACCGCTTGCAATCGGACTCATAGTTGGGGCAAACATCTT 798
Query 743 AGTAGGTGGACCATTTTCTGGTGCTTCGATGAATCCAGCTAGAGCCTTTGGTCCAGCATT 802
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 799 AGTAGGTGGACCATTTTCTGGTGCTTCGATGAATCCAGCTAGAGCTTTTGGTCCAGCGTT 858
Query 803 GGTGGGATGGAGATGGCATGACCACTGGATCTACTGGGTCGGGCCATTCATCGGTAGTGC 862
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 859 GGTGGGATGGAGATGGCATGACCACTGGATCTATTGGGTCGGACCATTCATCGGTAGTGC 918
Query 863 TTTAGCCGCTCTTATATATGAGTACATGGTCATACCCACCGAACCACCTACCCACCACAC 922
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 919 TTTAGCCGCCCTTATATATGAGTACATGGTCATACCCACCGAACCACCTACCCACCACGC 978
Query 923 ACATGGTGTACACCAGCCCTTGGCTCCTGAAGATTACTAGATGGAACTTTCCTCATTTCA 982
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 979 ACATGGTGTACACCAGCCCTTGGCCCCTGAAGATTACTAGATGGAACTTTCCTCATGTCA 1038
Query 983 CCACTGCTTTTGTTAGTTGTTCAAGCTCACTTTGTCTGTATGATGAAATCACTTGCATAG 1042
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1039 CCACTGCTTTTGTTCGTTGTTCAAGCTCTCTTTGTCTGTATGATGAGATCACTTGCATAG 1098
Query 1043 ATACTTTGTTT-TGATGCTACTCTTTGTTTGTTGTAATAATAAGAA-TAAAGAAGGATTT 1100
||||||| ||| | ||||||||||| | ||||||||||||| || ||||||| |||||
Sbjct 1099 ATACTTTTTTTCTTATGCTACTCTTA-T--GTTGTAATAATAAAAAATAAAGAACGATTT 1155
Query 1101 CGCAA 1105
|||||
Sbjct 1156 CGCAA 1160
Score = 220 bits (119), Expect = 2e-56
Identities = 126/129 (98%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 17 AAC-TCTAAGTTATGGTTAAGTAATTGCATGCAATTTAAAGCTACGTGTCCTGCTTAAGA 75
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 30 AACATCTAAGTTATGGTTAAGTAATTGCATGCAATTTAAAGCTACGTGTCCAGCTTAAGA 89
Query 76 CACTCAAGTCTCACATCTGTCCCTTTTTACTTCGACTTCGCTTCTTTTGGCTTCTTTTAA 135
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 90 CACTCAAGTCTCACATCTGTCCCTTTTTACTTCGACTTCGCTTCTTTTGGTTTCTTTTAA 149
Query 136 ACTCTCTCT 144
|||||||||
Sbjct 150 ACTCTCTCT 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5