BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476452
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73210.1 | Symbols: | Protein of unknown function (DUF789) ... 2056 0.0
> AT1G73210.1 | Symbols: | Protein of unknown function (DUF789)
| chr1:27528052-27530946 REVERSE LENGTH=1814
Length=1814
Score = 2056 bits (1113), Expect = 0.0
Identities = 1379/1499 (92%), Gaps = 52/1499 (3%)
Strand=Plus/Plus
Query 2 AGAAAGAGAAAGAGAAGAAGCGTTTCGTCCTCTTCGTTTCCTTCTTCCATTAATACAAAG 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGAAAGAGAAAGAGAAGAAGCGTTTCGTCCTCTTCGTTTCCTTCTTCCATTAATACAAAG 65
Query 62 CAAATCCTACTCAGAAAG---CTTTATTCAATCTCTCTACTTCAGTTTCTGTGTCCCCAT 118
|||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||
Sbjct 66 CAAATCCTACTCTGAAAGCTTCTTTATTCAACCTCTCTACTTCAGTTTCTCTGTCCCCAT 125
Query 119 TTTTCATCAGAGAGTT-AAACTTTAACCTCAAAATCTGGGAAT-AAGT--AAAAAAGAA- 173
|||||||| ||||||| ||||| ||||||||||||||| | || |||| |||||| ||
Sbjct 126 TTTTCATCTGAGAGTTAAAACTGTAACCTCAAAATCTGAG-ATAAAGTCAAAAAAAAAAC 184
Query 174 CCCAGTTTCTGATTATCATTTTCCCTTTATAATCGAAAGTTTCGATTTTTAAGAAGACCC 233
|||||||| ||||| |||||||| ||||||||||||||| |||||||||||| || | ||
Sbjct 185 CCCAGTTTATGATTCTCATTTTCTCTTTATAATCGAAAGCTTCGATTTTTAACAA-AACC 243
Query 234 CAGAAGCTGTGTTCTTG-----ATTTTTTCTTGGTGAGAGTAATCtttttttttGGGAGG 288
||||| ||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct 244 CAGAATCTGTGTTCTTGTTTTTTTTTTTTTTTGGTGAGAGTTATCTTTTTTTTT------ 297
Query 289 GTTTAAAGGGAAAATATTGGGTGAGAATCTGAGTGTTGGGATTTACATAAAACGATAAAA 348
||| || |||||||||||||||||||||| |||||||||||||||| ||| |
Sbjct 298 -TTT----GG--AATATTGGGTGAGAATCTGAGTAATGGGATTTACATAAAAAGATTCTA 350
Query 349 AGGAAAGA-GGAGAGAAGACCAGAAATTATTAAATTTCCAAACTTTGTGTTCCATTTCGT 407
| ||| | | | || | ||||||||||||||||||||||||||||||||||| ||
Sbjct 351 TGTAAATACTAAAATAA-TCTGGAAATTATTAAATTTCCAAACTTTGTGTTCCATTTTGT 409
Query 408 GGACTCAAATTTGTTTATAAAGATCTCAAAATCAGAGAGATT--GA-G---AAG-AC--- 457
||||||||||||||||||||||||||| |||||||||||||| || | ||| ||
Sbjct 410 GGACTCAAATTTGTTTATAAAGATCTC-AAATCAGAGAGATTGAGACGACCAAGAACAAG 468
Query 458 C--AAGAAGAAG--G-ATTGAGAGAATGTGGTGGTGGTCTTCTTCCACAAAAGGTCGTTC 512
| ||||||||| | ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 469 CAGAAGAAGAAGAAGAATTGAGAGAATGTGGTGGTGGTCTTCTTCAACTAAAGGTCGTTC 528
Query 513 GAATCTGGAGAGGTTTCTTTTAGGAATCACTCCTAAGCCTCCTTCGTTCTCTCATCCTCA 572
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 529 GAATCTGGAGAGGTTTCTTTTAGGAATCACTCCTAAGCCTCCTTCCTTCTCTCTTCCTCA 588
Query 573 GGAACAGGGAAAGGAGGAGATTGAGTATTTCAGGCTTGGTGATCTTTGGGATTGTTATGA 632
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 589 GGAACAGGGAAAGGAGGAGATTGAGTATTTCAGGCTTGGTGATCTCTGGGATTGTTATGA 648
Query 633 TGAGATGAGTGCGTATGGCTTTGGAACACAGGTTGATTTAAGCAATGGCGAAACCGTTAT 692
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 649 TGAGATGAGTGCGTATGGCTTTGGCACACAGGTTGATTTAAACAATGGCGAAACCGTTAT 708
Query 693 GCAGTACTATGTCCCGTACCTATCCGCCATCCAAATCCACACTAACAAACCCGCCTTGAT 752
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 709 GCAGTACTACGTCCCGTACCTATCCGCTATCCAAATCCACACTAACAAACCCGCCTTGCT 768
Query 753 TTCCAGGAACCAGAATGAGGTGGCTGAATCTGAGAGTAGCGAGGGTTGGAGCGATAGTGA 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTCCAGGAACCAGAATGAGGTGGCTGAATCTGAGAGTAGCGAGGGTTGGAGCGATAGTGA 828
Query 813 GAGTGAAAAGTTGTTGTCAAGGTCATTGAGCAATGATTCGAGCAAAACATGGGATGCTGT 872
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 829 GAGTGAAAAGTTGTTGTCAAGGTCAATGAGCAATGATTCAAGCAAAACATGGGATGCTGT 888
Query 873 CTCTGAAGATTCGGTTTTCGATCCGGATGGTACGCCATTGCTGAAAGAGAGACTTGGTTG 932
||||||||||||||||||||||||||||||| | || ||||||||||| |||||||||
Sbjct 889 CTCTGAAGATTCGGTTTTCGATCCGGATGGTTCACCGTTGCTGAAAGATAGACTTGGTAA 948
Query 933 CCTTGACTTTAAGTACATTGAAAGGGATCCTCCGCACAAGCGGATTCCCTTAACCGACAA 992
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 949 CCTTGACTTTAAGTACATTGAAAGAGATCCTCCGCACAAGCGGATTCCCTTAACCGACAA 1008
Query 993 GATAAACGTATTGGTGGAGAAATATCCAGGACTCATGACCTTAAGGAGTGTCGACATGTC 1052
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1009 GATAAACGTATTGGTGGAGAAATATCCGGGACTCATGACCTTAAGGAGTGTCGACATGTC 1068
Query 1053 TCCTGCAAGTTGGATGGCTGTTGCGTGGTACCCGATATATCAGATCCCAACCTGCAGAAA 1112
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 1069 TCCTGCAAGTTGGATGGCTGTTGCGTGGTACCCGATATACCACATCCCAACCTGCAGGAA 1128
Query 1113 CGAGAAAGATTTGACGACAGGCTTCCTAACTTATCATACTCTATCTTCGTCTTTTCAAGA 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CGAGAAAGATTTGACGACAGGCTTCCTAACTTATCATACTCTATCTTCGTCTTTTCAAGA 1188
Query 1173 TAATGTGGTGGAAGGAGATCAAAGCAACAACACAGGCAATGAAGAAACAGAGTTTTGTGA 1232
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1189 TAATGTGGTGGAAGGAGATCAAAGCAACAACA-A-----TGAAGAAACAGAGTTTTGTGA 1242
Query 1233 AGATTCTGTTATAAACAAGAGAATCCCATTGCCTCCATTTGGTGTAGCAACTTACAAAAT 1292
|||||| || |||||||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 1243 AGATTCCGTAATAAACAAGAGAATGCCATTGCCTCCGTTTGGTGTAACAACTTACAAAAT 1302
Query 1293 GCAAGGAGATCTTTGGGGGATGACGGGATTTGACCAAGACCGGTTGGTTTATCTTCAAAG 1352
|||||||||||||||||||| |||||| |||||||| ||||||||| |||||||||||||
Sbjct 1303 GCAAGGAGATCTTTGGGGGAAGACGGGGTTTGACCAGGACCGGTTGCTTTATCTTCAAAG 1362
Query 1353 CGCTGCGGATTCATGGCTGAAACAGCTCAATGTTGATCACCATGACTATAACTTCTTCCT 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CGCTGCGGATTCATGGCTGAAACAGCTCAATGTTGATCACCATGACTATAACTTCTTCCT 1422
Query 1413 AAACTCAAGCTTCTAAAGATCAATCGGGTCGTTCGTATGTTTAtccttctccaaacctt 1471
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 TAACTCGAGCTTCTAAAGATCAATCGGGTCGTTCGTATGTTTATCCTTCTCCAAACCTT 1481
Score = 357 bits (193), Expect = 2e-97
Identities = 279/316 (88%), Gaps = 24/316 (8%)
Strand=Plus/Plus
Query 1466 aaccttttttctttgttgttttcaaaaactcc-tttccttctc--tg-----tgtt-ttt 1516
|||| |||||||||||||||||| || |||| ||| ||||| || |||| |||
Sbjct 1504 AACCCTTTTTCTTTGTTGTTTTC--AAGCTCCTTTTGTTTCTCTGTGTTTTTTGTTCTTT 1561
Query 1517 ttatttttgtCTGGCTCGTTGTGTTGTTTTAGGTAGCAACCGCCGCCATCGCGGAGTTTT 1576
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1562 TTGTTTTTGTCTGGCTCGTTGTGTTGTTTTAGGTAGCAACCGCC---ATCGCGGAGTTTT 1618
Query 1577 TTCCCCTGTTGCAAGCCCATCATGGAAGTTTCTAAGAAGAAAACAGAGCTTCttttt-tt 1635
||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1619 TTCTCCTTTTGCAAGCCAATCATGGAAGTTTCTAAGAAGAAAACAGAGCTTTTTTTTCTT 1678
Query 1636 tttC---A-CGGTGTTGAGAAAACAAGAAAGTTGTTTTCTTCTCTTGGGTGAGA--TCAT 1689
||| | |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1679 TTTTTTTAACGGTGTTGAGAAAACAAGAAAGTTGTTTTCTTTTCTTGGGTGAGAGATCAT 1738
Query 1690 GTAAATTGACCTTGAACAGAGAACTCTGTTTTGTACTTTTCTGTCTAAA-TATATAAAAA 1748
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1739 GTAAATTGACCTTGAACAGAGGACTCTGTTTTGTACTTTTCTGTCTAAAATATATAAAAA 1798
Query 1749 A--CAGTCTTTCTTGT 1762
| | |||||||||||
Sbjct 1799 AATCTGTCTTTCTTGT 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5