BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476454
Length=1733
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73220.1 | Symbols: AtOCT1, 1-Oct | organic cation/carnitine... 2761 0.0
> AT1G73220.1 | Symbols: AtOCT1, 1-Oct | organic cation/carnitine
transporter1 | chr1:27538276-27540235 FORWARD LENGTH=1857
Length=1857
Score = 2761 bits (1495), Expect = 0.0
Identities = 1655/1734 (95%), Gaps = 3/1734 (0%)
Strand=Plus/Plus
Query 1 GACCATGTGTATATATACCCTCGCTAACTTAAGACATATATCAATCAAGCCCACAAGCCT 60
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct 8 GACCATGTGTATATATACCATCGCTAACTTAAGACATATATCAATCAATCCCACAAACCT 67
Query 61 -AATTTAAAACAAAAATATTTCTACCTGAAACAACATAAACA-AACTGGAACCTTCAAAA 118
|||| |||||||| ||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 68 AAATTGAAAACAAATATATTTCCACCTGAAACAACATAAACAGAA-TGGAACCTTCAAAA 126
Query 119 CAAGAAGTTCCAAAGCTCATGGAGACACCACCAAACATATCCAATGATTCATCAGCATCC 178
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||| ||
Sbjct 127 CAAGAAGTTCCAAAGCTCATGGAGACACCACCGAACATATCAAACGATTCATCAGCAACC 186
Query 179 GAGAAAGGAGAAGcaacaaggcaacaacaacaaccaaacaaTAGGTACGCACTCACAGTT 238
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 187 GAGAAAGGAGAAGCAACAAGGCAACAACAGCTACCAAACAATAGGTACGCACTCACAGTT 246
Query 239 GACGAGGTGATCGAGCAACACATTGGCGCACTTGGGTTTGCTCAGATCTTGCATGCTCTC 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 247 GACGAGGTGATCGAGCAACACATTGGAGCACTTGGGTTTGCTCAGATCTTGCATGCTCTC 306
Query 299 TTAGTCTCCATCGCTTGGATCTTCGATGCTCAGACCACTCTTATATCCATTTTCTCCGAC 358
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 TTGGTCTCTATCGCTTGGATCTTCGATGCTCAGACCACTCTTATATCCATTTTCTCCGAT 366
Query 359 GCTCAGCCCGCTGCGAGGCTTCTTGCAACCGGTGCCATCGTGGAGGGCGCGTCGTTGTGT 418
||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 367 GCTCAGCCCGCGGCGAGGCTTCTTGCAACCGGTGCCATCGTGGAGGGTGCCTCCTTGTGT 426
Query 419 GGCTTGGCCAGTGGAGAATGGGAATGGATTGGATCAAAGAGTGACACTGTTGTTTCTGAG 478
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 427 GGATTGGCCAGTGGAGAATGGGAATGGATTGGACCAAAGAGTGACACTGTTGTTTCTGAG 486
Query 479 TGGAATCTCATATGTCAACATAAGTTTCTTGTTGCTGTTCCTTCCACTCTATTCTTCATC 538
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 487 TGGAATCTCATATGTCAACATAAATTTCTTGTGGCTGTTCCTTCCACACTATTCTTCATC 546
Query 539 GGATCTCTTTTCGGTTCTGGTGTTTATGGATATCTTGCTGATTCATGGTTTGGTCGAAAA 598
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 547 GGATCTCTTTTCGGTTCTGGTGTGTATGGATATCTTGCTGATTCATGGTTTGGTCGAAAG 606
Query 599 AAGACTCTGTTACTCTCTTGTGTATTAACTTTTGTCACGGCCTTCGCGATCTCTTTTTCA 658
|||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 607 AAGACTTTATTACTCTCTTGTGTATTAACTTTCGTCACGGCCTTTGCGATCTCTTTTTCA 666
Query 659 CCAAACGTATGGGTTTACGCATTCTTGCGTTTTGCCAATGGTTTCTTTAGATCAGGAATT 718
|||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 667 CCAAACGTTTGGGTTTATGCATTCTTGCGTTTTGCCAACGGTTTCTTTAGATCAGGAATT 726
Query 719 GGGTCTTGTTGTATCGTACTCGCAACTGAGATTGTTGGCAAAAAGTGGCGAGGCCAAGTA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GGGTCTTGTTGTATCGTACTCGCAACTGAGATTGTTGGCAAAAAGTGGCGAGGCCAAGTA 786
Query 779 GGGCAATACGGTTTCTTCTTCTTCACGTTAGGTTTTCTATCTCTGCCACTCATGGCTTAT 838
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 787 GGGCAATACGGTTTCTTCTTCTTCACGTTAGGTTTTCTATCTCTACCACTCATGGCTTAC 846
Query 839 TTGGAGAGAAAGTCATGGAGAAATCTTTACCGGATCATATCCTTTCTTCCTCTTGGATAC 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 TTGGAGAGAAAGTCCTGGAGAAATCTTTACCGGATCATATCCTTTCTTCCTCTTGGATAC 906
Query 899 GCGGTTTGTCTCTTGCCCTTTGCTTATGAGTCTCCTCGATGGCTTCTTGTCAAGGGACGT 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GCGGTTTGTCTCCTGCCCTTTGCTTATGAGTCTCCTCGATGGCTTCTTGTCAAGGGACGT 966
Query 959 AACAAAGAAGCCATGGTGGTCTTGAAGAAACTCGCGAGGCTTAACGGGAAACAACTTCCG 1018
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 967 AATAAAGAAGCCATGGTGGTCTTGAAGAAACTCGCGAGGCTCAACGGGAAACAACTTCCG 1026
Query 1019 GCGGATCTAAGCCTAGTCGATCCAATTCCAGAGAGAGATGATCAAACTTCATCAGCGGAG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1027 GCGGATCTAAGCCTAGTCGATCCAATTCCAGAGAGAGATGATCAAACTTCATCATCGGAG 1086
Query 1079 AAGTTTTGGAAAACAAAATGGGCAGTAAAAAGAATCATAATGGTTATGATGGCTGGATTT 1138
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1087 AAGTTTTGGAAAACAAAATGGGCAGTGAAAAGAATCATAATGGTTATGATGGCTGGATTT 1146
Query 1139 GGCAGTGGCTTTGTTTATTATGGAATTCAACTAAATGCTGAAAATCTCAACTTCAATCTT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 GGCAGTGGCTTTGTTTATTATGGAATTCAACTAAATGCTGAAAATCTCAACTTCAATCTT 1206
Query 1199 TATTTAACCGTTGCTGTTAACGCACTGATGGAGTTTCCAGCGGTTTTCATAGGAAGTTTC 1258
|| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1207 TACTTAACTGTTGCTGTTAACGCTCTGATGGAGTTTCCAGCGGTTTTCATCGGAAGCTTC 1266
Query 1259 CTCCTCGGGGTCATGAACCGGCGTCCACTATTCTCGAACTCATCATACCTCGCTGGAGTC 1318
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||
Sbjct 1267 CTCCTCGGGGTCATGAACCGCCGTCCACTATTCTCGAATTCATCATACCTCGCCGGATTC 1326
Query 1319 GCGTGTCTACTCTGCGCGGTTCTCTCTATCCACCGCGTGATCCGTGCCATATCTGTTGCG 1378
|||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1327 GCGTGTCTGCTCTGCGCGGTTCTCTCGATCCACCGCGTGATCCGTGCGATATCTGTGGCA 1386
Query 1379 AAATGGTTACAACTTGCAGTTGAGGCAGTTGGATTCATGGCATCCTCGACAGCGTATGAC 1438
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1387 AAATGGTTACAACTTGCAGTTGAGGCGGTTGGGTTCATGGCATCCTCGACAGCGTATGAC 1446
Query 1439 GTCCTATATGTCTACTGTGTCGAGCTGTTCCCAACAAACGTTAGGAACACTGCTGTCTCG 1498
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GTCCTATATGTCTACTGCGTAGAGCTGTTCCCAACAAACGTTAGGAACACTGCTGTCTCA 1506
Query 1499 CTTTTGCGTCAAGCGTTTATGCTAGGAGCGTCCGCAGCACCGCTGCTAGTTGCGTTGGGA 1558
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 1507 CTTTTGCGTCAAGCGTTTATGCTAGGAGCGTCTGCAGCACCACTGCTAGTTGCGTTAGGA 1566
Query 1559 AGGGAAAGTGCAATGATGTCGTTTATCGTGTTTGGTGTTGCATCTGTGCTGAGCGGCGTC 1618
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||
Sbjct 1567 AGGGAAAGCGCAATGATGTCGTTCATCGTGTTTGGTGTTGCATCAGTGCTGAGCGGCATC 1626
Query 1619 ATGAGTCTCTGGCTACGAGAAACACGAAATGCACCGCTTTACGAAACACTAGCACAGCAG 1678
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 1627 GTGAGTCTCTGGCTACGAGAAACTCGAAACGCTCCGCTTTACGAAACACTAGCACAACAG 1686
Query 1679 GGGAAAGCGGAAGAGATCGAAAATGAAACAATCCTGAGTACTTGATTGCATTCA 1732
||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct 1687 GGGAAAGCGGAAGAGATCGAAAACGAAACAATCATGATTACTTGATTGCATTCA 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85692330315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5