BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476456
Length=1853
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73240.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleopor... 2809 0.0
> AT1G73240.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Nucleoporin
protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits
to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa
- 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:27542187-27544920 REVERSE
LENGTH=2022
Length=2022
Score = 2809 bits (1521), Expect = 0.0
Identities = 1772/1888 (94%), Gaps = 37/1888 (2%)
Strand=Plus/Plus
Query 1 TCGTTGGCTCACTCACTTGACTTCACGGCCCCGCTCAAGTTCCGACACGAAACTCATTTT 60
||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 137 TCGTTGGCTCAGTCACTTGACTTCACGGCCCCGCTCAAGCTCTGACACGAAACTCATTTC 196
Query 61 AAATTAA--T--T-----CTTAA--ACAAAAGGGGCAAAAATAATCGCCGGCGATTATGC 109
||||||| | | ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 197 AAATTAATTTAATAAAACCTTAATCACAAAAGGGGCAAAAGCAATCGCCGGCGATTATGC 256
Query 110 CTTCTCCTCCGGTACCGCAGACGGTTGTTAGCCACCGCTTCGCAGCTTTTCTTATCTGGC 169
||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 257 CTTCTCCTCCGGTGCCGGAGACGGTTGTGAGCCACCGCTTCGCAGCTTTTCTTATCTGGC 316
Query 170 AATCGATTCCTTCATCAGCCAttttcttcttcttcaaccttttcctcttctccaccactt 229
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 317 AATCGATTCCTTCATCAGCCATCTTCTTCTTCTTCAACATTTTCCTCTTCTCAACCACTT 376
Query 230 caatcatctcctttttcctcactttcctcgtcttccattcctcacagcttctcttctccg 289
||||||| |||||| || |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 377 CAATCATTTCCTTTCTCTTCACTTTCCTCGTCTTCCATTCTTCACAGCTTCTATTCTCCG 436
Query 290 tctcactagctctcctctcttctccgactccagattctcctctctcccctctccaattcg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TCTCACTAGCTCTCCTCTCTTCTCCGACTCCAGATTCTCCTCTCTCCCCTCTCCAATTCG 496
Query 350 ctctcggccttctccgtcacctctcGGATCCCGAGTTCCGCCGCCGTGCTCGCGTATCTT 409
|| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CTGTCGGTCTTCACCGTCACCTCTCGGATCCCGAGTTCCGCCGCCGTGCTCGCGTATCTT 556
Query 410 TACGCATCGTGCTCTTCGTCTGCGCTACTTCCCTCGCTGGGTTCTGCTCCGCTGCTGTGT 469
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 557 CACGCATCGTGCTCTTCGTCTGCGCTACTTCCCTCGCTGGATTCTGCTCCTCTGCTGTGT 616
Query 470 TTTGCTTGTCTAGTGATTCGTTTGGACCGATTGGAAGAATAGGGTTTAGGGGATTTGTGA 529
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 617 TTTGCTTGTCTAGTGATTCGTTTGGACCCATTGGAAGAATAGGGTTTAGGGGATTAGTGA 676
Query 530 CTGGATTGCTTTACGCAGTCCTCTTCGTCATTAAGCAGCGATGGGTTTTGGAGTTTCCAA 589
||||||||||||||||||||||||| || | |||||| |||||||||||||||||||| |
Sbjct 677 CTGGATTGCTTTACGCAGTCCTCTTTGTTACTAAGCAACGATGGGTTTTGGAGTTTCCTA 736
Query 590 TCATTCAGCGTCCACCGTTCTTCAGCTTCAAGATTGGTCTTCCTTCGGCTCTCACACAAG 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 737 TCATTCAGCGTCCACCGTTCTTCAGCTTCAAGATTGGTCTTCCTTCGGCTCTAACACAAG 796
Query 650 CTCTGAAGCTATCTGGTGTGCTTTATGTGTTGTCAACGATAATGCTATTGTTTCTGCTAG 709
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 797 CTTTGAAGCTATCTGGTGTGCTTTATGTGTTGTCGACGATAATGCTATTGTTTCTGCTAG 856
Query 710 ACTGGTCGGGTGGGCTTGTGTCTGTATCGAGATTCTTGGGTGAGCAGGTCTTATCTTATG 769
||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 857 ACTGGTCAGGTGGGCTTGTGTCTGTATCGAAATTTTTGGGTGAGCAGGTCTTATCTTATG 916
Query 770 CCGGCAGTTTCTGTTTAATTCTCTCTTGGGAAGTCACTCACCATATACATAAGGTTCTGC 829
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CCGGCAGTTTCTGTTTGATTCTCTCTTGGGAAGTCACTCACCATATACATAAGGTTCTGC 976
Query 830 ACACAAAACGGTTCAGCTTTGCTCCTCCAAAAGGATCTGCTGCAGCAGAAACGAATCCAA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 ACACAAAACGGTTCAGCTTTGCTCCTCCAAAAGGATCTGCTGCAGCAGAAACGAATCCAA 1036
Query 890 GTGAGCCTCTTCTTGCTGCTTTAGAAGGGAGCGCTCCGGGTTCCCTCGAGCAGTCTCTTG 949
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1037 GCGAGCCTCTTCTTGCTGCTTTAGAAGGGAGCGCTCCAGGTTCCCTCGAGCAGTCTCTTG 1096
Query 950 CATACCTTGATCTCTACATGGTGTCTCAGAATAATGTCGACACATGGCGTCGTGCTGCCT 1009
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1097 CATACCTTGATCTCTACATGGTGTCTCAGAATAATGTTGACACATGGCGTCGTGCTGCCT 1156
Query 1010 TCTTCGAGGAGTCCACCGAGACTTACAAAAGAGTAATCACTCTATGCTTGAGGCCTTTGG 1069
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1157 TCTTTGAGGAGTCCACCGAGACGTACAAAAGAGTAATTACTCTATGCTTGAGGCCTTTGG 1216
Query 1070 AAGAGCTTGCCTCCAAGTTATCTTCTGGGCTAGACCACACCTTTACTGAAAAAGGTTATC 1129
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1217 AAGAGCTTGCCTCCAAGTTAGCTTCTGGGCTAGACCACACCTTTACTGAAAAAGGTTATC 1276
Query 1130 AGACACCACTCCAGCCACCAACCGAGTCATTTATCGATCCAAAGTTTGGGGAATCACTTA 1189
|||||||||||||||||||||||||||| ||||| |||||||| || || ||||||||||
Sbjct 1277 AGACACCACTCCAGCCACCAACCGAGTCCTTTATTGATCCAAAATTCGGCGAATCACTTA 1336
Query 1190 AGTCTTTCCAGCTATATGCATGGTGTGCTCAAACAACTGCATCCCTGACTTCAATCTCTC 1249
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1337 AGTCTTTCCAGCTATATGCATGGTGTGCTCAAACATCTGCATCCCTGACTTCAATCTCTC 1396
Query 1250 ACAAGGAAGACAGGCTTGGAGTAGCTCAACTGTCTGGTGGAAACGCTGATGTTGTCTCAA 1309
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 ACAAGGAAGACAGGCTCGGAGTAGCTCAACTGTCTGGTGGAAACGCTGATGTTGTCTCAA 1456
Query 1310 CACTTGTATCGCTTTTGCTAGCTATTGAAACGTTTATGGGGAAGAAGACTAATCTTCAAT 1369
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1457 CACTTCTATCGCTTTTGCTAGCTATCGAAACGTTTATGGGGAAGAAGACTAATCTTCAAT 1516
Query 1370 CACCTCAACAACTGATGGGACCTGCTAGTATCAAATGGGCGACCTCGAGTATGGTCAGAA 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 CACCTCAACAACTGATGGGACCTGCTAGTATCAAATGGGCGACCTCGAGTATGGTCAGAA 1576
Query 1430 AAGACGTTAAACCCATAAAAAGGAGTATTGGGGGGATGTACTCCTATGCGTATGCAGCTA 1489
|||||||||||||||| |||||||||||||| | |||||| |||| || |||||||| |
Sbjct 1577 AAGACGTTAAACCCATCAAAAGGAGTATTGGCGCAATGTACGCCTACGCATATGCAGCGA 1636
Query 1490 CAGATGTTTTAAGGATATCAATATACCAGATTCTGTCCACATTCCGCGATGAAATGCTCA 1549
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1637 CAGATGTTTTGAGGATATCAGTATACCAGATTCTATCCACATTCCGCGATGAAATGCTCA 1696
Query 1550 ACAGCGACAGAGCCGGACTTCTTGGTAGAGATTGGATCGGAAGCAAGAAACCGCCTTTTG 1609
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1697 ACAGCGACAGAGCCGGACTTCTTGGTAGAGATTGGATTGGAAGCAAGAAACCACCTTTTG 1756
Query 1610 GAACAAACGACATGCTGCTACAGAAGCTTAAGCTCTTCCTCGAGTTCCAAGCTTGATGAA 1669
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1757 GAACAAACGACATGCTCCTACAGAAGCTTAAGCTCTTCCTCGAGTTCCAAGCTTGATGGA 1816
Query 1670 AGATTAAAGAAGTAGGATTCCTCGATTAAATGCGGTAACAAGT---ATCATGATTCAAAG 1726
|||||||||| ||| |||||||||||||||| |||||||||| |||||||||||| |
Sbjct 1817 AGATTAAAGAGGTACAATTCCTCGATTAAATGTGGTAACAAGTGTCATCATGATTCAA-G 1875
Query 1727 AGCTGGAAAGAAAAAGAAACTAGAGT-----G--A---G--C------C-TTGTATTGAA 1767
||||||| |||||||| ||||||||| | | | | | |||||||| |
Sbjct 1876 AGCTGGATAGAAAAAGGAACTAGAGTATTTTGTTACATGATCAAAAAGCCTTGTATTGGA 1935
Query 1768 AAATGAAATCCCTCGATTTTGCAGA--TTTGGGATTAATCTTCTTTTTTGGTGAACTACA 1825
||||||||||||||||||||||||| ||||||||||||||| ||||| ||| ||||| |
Sbjct 1936 AAATGAAATCCCTCGATTTTGCAGAAATTTGGGATTAATCTTGTTTTT-GGTAAACTAGA 1994
Query 1826 AAATTATATAAGAATCAAACTTTATTGG 1853
|||||||||||||||||||||||| |||
Sbjct 1995 AAATTATATAAGAATCAAACTTTAATGG 2022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91716395715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5