BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476458
Length=844
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73260.1 | Symbols: ATKTI1, KTI1 | kunitz trypsin inhibitor ... 1059 0.0
> AT1G73260.1 | Symbols: ATKTI1, KTI1 | kunitz trypsin inhibitor
1 | chr1:27547274-27548190 REVERSE LENGTH=917
Length=917
Score = 1059 bits (573), Expect = 0.0
Identities = 704/766 (92%), Gaps = 13/766 (2%)
Strand=Plus/Plus
Query 19 TCCATTGGCTATAATCATACTAACGTGTTTATAAATAAGTATTACATCAACCCATATTTT 78
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 44 TCCATTGG-AATAATCATACTTACGTGTTTATAAATAAGTATTACATCAACCCATATCTT 102
Query 79 CTTCGTCCACAAATAACCATTGGCTAT-ACTATCACAAAAACTACCAAAACCATGAACCC 137
|||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||
Sbjct 103 CTTCATCCACAAATAACCATTGGCTATAATTATGACAAAAACTACCAAAACCATGAATCC 162
Query 138 TACCTTTTACTTAGTTCTTGCCTTAACCGCGGTTTTGGCCTCAAACGCATATGGTGCCGT 197
|| |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 163 TAAGTTTTACTTGGTTCTTGCCTTAACCGCGGTTCTGGCCTCAAACGCATATGGTGCGGT 222
Query 198 TCTCGACATCGACGGCAACATCATATTCCACGAAAGTTACTACGTTCTCCCTGTCATCCG 257
| | |||||||| || ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 223 TGTAGACATCGATGGAAACGCCATGTTCCACGAAAGTTACTACGTTCTCCCTGTCATCCG 282
Query 258 TGGCCGAGGAGGCGGCCTGACTCTAGCAGGCCGCGGTGGTG-AGCTATGTCCTCT-CGAT 315
||||||||| || |||||||||||||||||||||||||| | ||| ||||||| | ||||
Sbjct 283 TGGCCGAGGCGGAGGCCTGACTCTAGCAGGCCGCGGTGG-GCAGCCATGTCCT-TACGAT 340
Query 316 ATCGTGCAGGAATCTTCAGAACTCGAGGAGGGCATTCCCGTAAAATTTTCAAACTGGAGG 375
||||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||
Sbjct 341 ATCGTGCAGGAATCTTCAGAAGTTGATGAGGGCATTCCCGTAAAATTCTCAAACTGGAGG 400
Query 376 CTTAAAGTTGCATTCGTTCCCGAATCAGAGAACCTCAACATCGAAACAGACATCGGAGCC 435
||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 401 CTTAAGGTTGCGTTCGTTCCCGAATCACAGAACCTCAACATCGAAACAGACGTCGGAGCC 460
Query 436 ACGATCTGCGTTCAGTCAACCTACTGGCGGGTCGGTGATTTTGACCACGAGAGGAAGCAG 495
||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 461 ACGATCTGCATCCAGTCAACCTACTGGCGGGTCGGTGAGTTTGACCACGAGAGGAAGCAG 520
Query 496 TACTTCGTTGTGGCGGGTCCTAAA-CCAGAAGGGTTTGGAAAAGATTCGTTGAAGAGTTT 554
|||||||| || || ||||| ||| ||||||||||| ||| |||||||||||||||||||
Sbjct 521 TACTTCGTGGTTGCTGGTCC-AAAGCCAGAAGGGTTCGGACAAGATTCGTTGAAGAGTTT 579
Query 555 CTTCAAGATCGAGAAATCTGGGGATCTTGG-TGCTTACAAGTTTGTGTTCTGTCCTCGGA 613
||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 580 CTTCAAGATCGAGAAATCTGGAGA----GGATGCTTACAAGTTTGTGTTCTGTCCTCGGA 635
Query 614 CTTGCGACTCTGGCAGTCCAAAATGCAGCGATGTCGGGATATTCGTGGATGAACTCGGCG 673
||||||||||||||| |||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 636 CTTGCGACTCTGGCAATCCAAAATGCAGCGATGTCGGGATATTCATAGATGAACTTGGCG 695
Query 674 TTCGTCGTTTGGCTTTAAGCGATGAGCCTTTCTTGGTTATGTTCAAAAAAGCCAATGTAA 733
||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |
Sbjct 696 TTCGTCGTTTGGCTTTAAGCGATAAGCCGTTCTTGGTTATGTTCAAAAAAGCTAATGTGA 755
Query 734 CCGAAGTTTCGTCCAAGACTATGTAAGAGGACAAGTCTCGATCTTT 779
|||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 756 CCGAAGTTTCGTCCAAGACTATGTGAGAGGACAACTCTCGATCTTT 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41141766393
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5