BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476461
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73320.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1663 0.0
> AT1G73320.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:27565394-27567222
REVERSE LENGTH=1301
Length=1301
Score = 1663 bits (900), Expect = 0.0
Identities = 1042/1110 (94%), Gaps = 12/1110 (1%)
Strand=Plus/Plus
Query 1 CCTCGCTCGTGTGAGTCTGTTTGGTCCGTCGATGCATATGGAAGCAGCCGAGAGAGTCAA 60
||||| | ||| |||| ||||||||||||||||||| ||||||||||| |||| |||| |
Sbjct 1 CCTCGTTTGTGAGAGTATGTTTGGTCCGTCGATGCACATGGAAGCAGCAGAGATAGTCCA 60
Query 61 TTCGGCGGCGCGTATTGGAGCTGAGAAAATGGACGAGGAGGATGAGACGGTGGAGGAGAT 120
||||||||||||| ||| |||||||||||||| | ||||||||||| |||||||||||||
Sbjct 61 TTCGGCGGCGCGTTTTGAAGCTGAGAAAATGGGCAAGGAGGATGAGGCGGTGGAGGAGAT 120
Query 121 ACGACAG-ATGAGTGGTTACGGCGGAGATGTGATAGTAGTCGGTGGGTTTCCGGCGTCGG 179
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 ACGAC-GTATGAGTGGTTACGGCGGAGATGTGATAGTAGTAGGTGGGTTTCCGGCGTCGG 179
Query 180 AGTCGGAATCGGAATCTGAATCCGATTTGGCGGCGGCGGAGATTATGGTTATATGGGCTA 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTCGGAATCTGAATCTGAATCCGATTTGGCGGCGGCGGAGATTATGGTTATATGGGCTA 239
Query 240 TTCAAGGGCCAACTTCTTTTTCTCCAAACGCCCTCGTTGCTCAATCTTCTCTTGAGCTGC 299
|||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 240 TTCAAGGGCCAACTTCTTTTGCTCCAAACACACTCGTTGCTCAATCTTCTCTTGAGCTGC 299
Query 300 GTCTCGATGCTTGTGGCCACTCACTCTCTATTCTCCAGTCGCCTTGTTCTTTGAACACGC 359
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 300 GTCTCGACGCTTGTGGCCACTCACTCTCTATTCTCCAGTCGCCATGTTCATTGAACACGC 359
Query 360 CTGGAGTAACCGGTTCAGTGATGTGGGACAGTGGAGTGGTGTTAGGGAAGTTCTTAGAAC 419
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 CTGGAGTAACCGGGTCAGTGATGTGGGACAGTGGAGTGGTGCTAGGGAAGTTCTTAGAAC 419
Query 420 ATTCTGTTGACTCTAAGGTTCTTTCTCTTGAAGGCAAGAAAATCGTCGAGTTGGGTTCTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATTCTGTTGACTCTAAGGTTCTTTCTCTTGAAGGCAAGAAAATCGTCGAGTTGGGTTCTG 479
Query 480 GTTGTGGCTTAGTTGGTTGTATCGCAGCACTTTTGGGAGGTAATG-TAGTCCTCACCGAT 538
| |||||||||||||||||||| ||||||||||||||||| |||| | |||||||| |||
Sbjct 480 GCTGTGGCTTAGTTGGTTGTATAGCAGCACTTTTGGGAGGCAATGCT-GTCCTCACTGAT 538
Query 539 CTTCCAGATAGATTGAGGCTACTCAAGAAGAATATCCAAACCAATTTGCACCGTGGGAAC 598
|||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 539 CTTCCAGATAGACTGAGGCTACTCAAAAAGAACATCCAAACCAATTTGCACCGTGGGAAC 598
Query 599 ACACGTGGATCTGCTACTGTGCAGGAACTTGTTTGGGGAGATGACCCAGATCCAGATTTG 658
|| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 599 ACGCGTGGATCTGCTATTGTGCAGGAACTTGTTTGGGGAGATGACCCTGATCCAGATTTG 658
Query 659 ATCGAACCATTCCCTGATTACGTATTAGGTTCAGATGTTATATACAGCGAAGAAGCTGTT 718
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 659 ATCGAACCATTCCCTGATTACGTATTAGGCTCAGATGTTATATACAGCGAAGAAGCTGTT 718
Query 719 CACCATTTGGTAAAAACGCTTTTGCAACTCTGCGGCGATCAAACTACAATCTTCCTAGCA 778
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 719 CACCATTTGGTAAAAACGCTTTTGCAACTTTGCAGCGATCAAACTACAATCTTCCTATCA 778
Query 779 GGAGAACTACGGAATGATGCTGTTCTTGAGTACTTCTTAGAAACCGCGCTGAAAGATTTC 838
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 779 GGAGAACTACGAAATGATGCTGTTCTTGAGTACTTCTTAGAAACCGCACTGAAAGATTTT 838
Query 839 GCGATCGGGCGTGTGGAACAAGCACAATGGCATCCGGATTATCGCAGCCGTCGAGTAGTG 898
||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 839 GCGATCGGGCGTGTGGAACAAACACAATGGCATCCAGATTATCGCAGCCATCGAGTAGTG 898
Query 899 CTTTACGTTCTTGAGAAGAAGTCGAAGAGATGCCTCGCTGATGACTCTTCGCTTAATCAA 958
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CTTTACGTTCTTGAAAAGAAGTCGAAGAGATGCCTCGCTGATGAATCTTCGCTTAATCAA 958
Query 959 TCTTATTAGCCATTGAGGTATTGTTTGTTTACACTTGACAGTGTATTGAAATAGATGGAA 1018
|||| ||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct 959 TCTTGTTAGCCATTGAGGTATTGTTTGTTTACACTTGACA----ACTGAAGTAGATGGCC 1014
Query 1019 CTCAGCGAGAAGTAAAGTTCTGGCCGGATCCTTCCTTGCATATTCGCATTA-ATC-ATGC 1076
|| |||| |||||| |||||||||| |||||||||||||||||| |||| | ||| | ||
Sbjct 1015 CTAAGCGGGAAGTATAGTTCTGGCCTGATCCTTCCTTGCATATTTGCAT-ACATCTA-GC 1072
Query 1077 TTATAGAGTGTTACAGATATACTAtttttt 1106
|||||||||||||||||||||||| |||||
Sbjct 1073 TTATAGAGTGTTACAGATATACTAATTTTT 1102
Score = 128 bits (69), Expect = 1e-28
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 1104 tttttCTTTGCCGTTGTAAAAAATGGATTCAGATCATTGAAGATATCTGGTTTGCTTTTT 1163
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1176 TTTTT-TTTGCTGTTGTAAAAAATGGATTCAGATCATTGAAGATATCTGGTCTGCGTTTT 1234
Query 1164 GAGTCAGACTCAATAATAGAGCAAAATTAAA 1194
|||||||| |||| ||||||||||||||||
Sbjct 1235 AAGTCAGACACAATTATAGAGCAAAATTAAA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5