BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476466
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 632 1e-180
> AT1G73350.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
growth stages; Has 50 Blast hits to 50 proteins in 20 species:
Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 3; Plants
- 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
| chr1:27575493-27577249 REVERSE LENGTH=946
Length=946
Score = 632 bits (342), Expect = 1e-180
Identities = 486/549 (89%), Gaps = 35/549 (6%)
Strand=Plus/Plus
Query 251 GCTGCAACCCAAGCTGATTCATCTCCAGCATCTGTTCCCTTACCCCTTCGTGTTGAGCCC 310
||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct 397 GCTGCAACCCAAGCTGATTCATCTCCAGCATCTATTCCCTTGCCACTTCGTGTGGAGCCC 456
Query 311 AAACCAAAAAGTGGTATCAGGCAGCAAGATTTGCTGAGAAAAGTTGTTGAGGTTAAACCT 370
|||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 457 AAACCAAAGAGTGGTATCAGGCAGCAAGATTTGCTGAGGAAAGTTGTAGAGGTTAAACCT 516
Query 371 AAACGTCCAAA-AGTCTCAACACTGTCAAGCCCAAGCTTATCTCCCCCTGATAGAAGTGA 429
||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 517 AAACGTCCAAAGA-TCTCAACACCATCAAGCCCAAGCTTATCTCCCCCTGTTAGAAGTGA 575
Query 430 TAGAGGTCCAACAGATGCAAAAGTTCACCGAGATAAGCAGAAAGAAGAACCTATGACTGT 489
||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| | ||
Sbjct 576 TAGAGGTCCAACAGAGGCAAAAGTTCACAGAGATAAGCAGAAAGAAGAAGCTATGCCAGT 635
Query 490 GTTGAAGAAAC-TGGACAGACCAGAGGAGCAACCTGCCGCAGACAAAAATGACAGTAAAG 548
||||||||||| ||| | | | ||| || | | | | |||| | ||||
Sbjct 636 GTTGAAGAAACCTGG-C-G-C-AGA----CA----G----A-A-A----TGACGGAAAAG 673
Query 549 CTACGGAAAGCAATGGACAAGGTCAAAATGCTCTGAAAGGCTTGTTGGGATTAGCATATG 608
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 674 CTACGGAAAGCAATGGGCAAGGTCAAAATGCTCCGAAAGGCTTGTTGGGATTAGCATATG 733
Query 609 AGAGTTCAGATGAAGAAGACTGAGAGGAGTGATGAACCCTGAATAGGGTTCTATCTCCTA 668
| |||||||||||||||||||||| |||||||| ||||||| | | | || | | ||
Sbjct 734 ATAGTTCAGATGAAGAAGACTGAGTGGAGTGAT-AACCCTGCA-A---T-CT--C-C-TA 783
Query 669 TATGTCTTCTTGCTTTTTATTTTGTCGAAAGCTTACAAGAGTTTAGCTTTAGGGTTCAAT 728
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 784 TAAGTCTTCTTGCTTTTTATTTTGTCGAAAGCTTACAAGAGTTTAGCTTTAGGATACAAT 843
Query 729 ACATCTTTTGCCATCTAGCTCTGCACTTGTTGTAATTGTTGAAACCAAATGGGTTTGTTG 788
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 844 ACATCTTTTGCCATCTAGCCCTGTACTTGTTGTAATTGTTGAAACCAAATGGGTTAGTTG 903
Query 789 GAGTTTGAA 797
|||||||||
Sbjct 904 GAGTTTGAA 912
Score = 287 bits (155), Expect = 1e-76
Identities = 171/179 (96%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 75 TAGAATCGAAGACGATGGCAGGTAGAGAAGTTCGAGAATACACAAATCTGTCTGACCCTA 134
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 110 TAGAATCGAAGACGATGGCAGGGAGAGAAGTTAAAGAATACACAAATCTGTCTGACCCTA 169
Query 135 AAGATAAGAAATTAGGGAAGGGTAAGATAGATGATGAAGACGTCACCTTTCAACGGATGG 194
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 170 AAGATAAGAAATCAGGGAAAGGTAAGATTGATGATGAAGACGTCACCTTTCAACGAATGG 229
Query 195 TTGCAAAGATGCAAGAGGTTGCTGGTGAACGTGGAGGCTATCTTCATGGACGGGGCGCT 253
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 230 TTGCAAAGATGCAAGAGGTTGCTGGTGAACGTGGAGGCTATCTTCATGGACGAGGCGCT 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38780761484
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5