BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476486 Length=599 Score E Sequences producing significant alignments: (Bits) Value AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 894 0.0 AT5G43740.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 54.7 1e-06 > AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:27643633-27645394 REVERSE LENGTH=722 Length=722 Score = 894 bits (484), Expect = 0.0 Identities = 562/600 (94%), Gaps = 4/600 (1%) Strand=Plus/Plus Query 1 CGGAAACAATGGCAATTAGCTTAGGGAGAGTCGTCGTTCCGTCGTGTACGATTCCTGGAG 60 ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||| Sbjct 1 CGGAAACAATGGCAATTAGCTTAGGTAGAGTCGTCGTTCCGTCGTGTACCATTTCTGGAG 60 Query 61 ATCGGCTCTTCGGACCAAACTTCTCGGCCATCTGCAGCGTCTCTTGCGGACGAATCAATG 120 ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 ATCGGCTCTTCATACCTAACTTCTCGGCCATCTGCAGCGTCTCTTGTGGACGAATCAATG 120 Query 121 TCGGAACCGGCGTCATTTTTGCTCGGCGACGCCGTGACATTGGCGGGTTTTTAATAACTA 180 ||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||| ||| Sbjct 121 TCGGAACCGGCGTAATTTCTGCTCGTCGACGCCGTGACATTGGCGGGGTTTTAATATCTA 180 Query 181 GCTGTCTCTC-ACCGGATTCGTCTTCTTCTCCACCGTCTTCTTCCTCCGGGACGAAGACG 239 |||||||||| | ||||||| ||||||||||||||||||||||| || ||| |||||||| Sbjct 181 GCTGTCTCTCTA-CGGATTCATCTTCTTCTCCACCGTCTTCTTCTTCTGGGCCGAAGACG 239 Query 240 AAACTCTATGTCAGTGGGCTTTCTTTCCGCACAACAGAAGATACCTTACGGGATACTTTT 299 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 240 AAACTCTATGTCAGTGGGCTTTCTTTCCGCACAACTGAAGATACCTTACGGGATACATTT 299 Query 300 GAACAGTTTGGCAAGCTTATACACATGAACTTAGTGATGGATAAAGTAGCTAATAGACCA 359 ||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 300 GAACAGTTTGGGAACCTTATACACATGAACATGGTGATGGATAAAGTAGCTAATAGACCA 359 Query 360 AGAGGTTTTGCTTTCCTACGGTATGAAACAGAGGAGGAGGCTATGAAAGCTATTCAAGGG 419 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 AAAGGTTTTGCTTTCCTACGGTATGAAACAGAGGAGGAGGCTATGAAAGCTATTCAAGGG 419 Query 420 ATGCATGGAAAGTTTTTGGATGGAAGGGTTATATTTGTGGAGGAAGCTAAAACCAGATCA 479 ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 420 ATGCACGGAAAGTTTTTGGATGGAAGGGTAATATTCGTGGAGGAAGCTAAAACCAGATCA 479 Query 480 GATATCTCCAGAGCTAAACCCAGACCAGACTTCCCCAAACCTCAATCCAAACCTCGCACC 539 ||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 480 GATATGTCCAGAGCAAAACCCAGACGAGACTTCCCCAAACCTCAATCCAAACCTCGCACC 539 Query 540 TTTCGGACGTGGTAGCTGTTTTGATTTTGTCTTATTATACTGTGTAATGAATTGTAAAAT 599 ||||| || |||||||| ||||||||||||||| |||||||||||||||||||| ||| Sbjct 540 TTTCGTACCTGGTAGCTCTTTTGATTTTGTCTTC--ATACTGTGTAATGAATTGTATAAT 597 > AT5G43740.1 | Symbols: | Disease resistance protein (CC-NBS-LRR class) family | chr5:17564738-17568802 FORWARD LENGTH=2866 Length=2866 Score = 54.7 bits (29), Expect = 1e-06 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 227 CGGGACGAAGACGAAACTCTATGTCAGTG 255 ||||||||||||||||||||||||||||| Sbjct 35 CGGGACGAAGACGAAACTCTATGTCAGTG 63 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28834400378 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5