BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476486

Length=599
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   894    0.0  
  AT5G43740.1 | Symbols:  | Disease resistance protein (CC-NBS-LR...  54.7    1e-06


> AT1G73530.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr1:27643633-27645394 REVERSE LENGTH=722
Length=722

 Score =  894 bits (484),  Expect = 0.0
 Identities = 562/600 (94%), Gaps = 4/600 (1%)
 Strand=Plus/Plus

Query  1    CGGAAACAATGGCAATTAGCTTAGGGAGAGTCGTCGTTCCGTCGTGTACGATTCCTGGAG  60
            ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||
Sbjct  1    CGGAAACAATGGCAATTAGCTTAGGTAGAGTCGTCGTTCCGTCGTGTACCATTTCTGGAG  60

Query  61   ATCGGCTCTTCGGACCAAACTTCTCGGCCATCTGCAGCGTCTCTTGCGGACGAATCAATG  120
            |||||||||||  ||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct  61   ATCGGCTCTTCATACCTAACTTCTCGGCCATCTGCAGCGTCTCTTGTGGACGAATCAATG  120

Query  121  TCGGAACCGGCGTCATTTTTGCTCGGCGACGCCGTGACATTGGCGGGTTTTTAATAACTA  180
            ||||||||||||| |||| |||||| ||||||||||||||||||||| |||||||| |||
Sbjct  121  TCGGAACCGGCGTAATTTCTGCTCGTCGACGCCGTGACATTGGCGGGGTTTTAATATCTA  180

Query  181  GCTGTCTCTC-ACCGGATTCGTCTTCTTCTCCACCGTCTTCTTCCTCCGGGACGAAGACG  239
            |||||||||| | ||||||| ||||||||||||||||||||||| || ||| ||||||||
Sbjct  181  GCTGTCTCTCTA-CGGATTCATCTTCTTCTCCACCGTCTTCTTCTTCTGGGCCGAAGACG  239

Query  240  AAACTCTATGTCAGTGGGCTTTCTTTCCGCACAACAGAAGATACCTTACGGGATACTTTT  299
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  240  AAACTCTATGTCAGTGGGCTTTCTTTCCGCACAACTGAAGATACCTTACGGGATACATTT  299

Query  300  GAACAGTTTGGCAAGCTTATACACATGAACTTAGTGATGGATAAAGTAGCTAATAGACCA  359
            ||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct  300  GAACAGTTTGGGAACCTTATACACATGAACATGGTGATGGATAAAGTAGCTAATAGACCA  359

Query  360  AGAGGTTTTGCTTTCCTACGGTATGAAACAGAGGAGGAGGCTATGAAAGCTATTCAAGGG  419
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  AAAGGTTTTGCTTTCCTACGGTATGAAACAGAGGAGGAGGCTATGAAAGCTATTCAAGGG  419

Query  420  ATGCATGGAAAGTTTTTGGATGGAAGGGTTATATTTGTGGAGGAAGCTAAAACCAGATCA  479
            ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  420  ATGCACGGAAAGTTTTTGGATGGAAGGGTAATATTCGTGGAGGAAGCTAAAACCAGATCA  479

Query  480  GATATCTCCAGAGCTAAACCCAGACCAGACTTCCCCAAACCTCAATCCAAACCTCGCACC  539
            ||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  480  GATATGTCCAGAGCAAAACCCAGACGAGACTTCCCCAAACCTCAATCCAAACCTCGCACC  539

Query  540  TTTCGGACGTGGTAGCTGTTTTGATTTTGTCTTATTATACTGTGTAATGAATTGTAAAAT  599
            ||||| || |||||||| |||||||||||||||   |||||||||||||||||||| |||
Sbjct  540  TTTCGTACCTGGTAGCTCTTTTGATTTTGTCTTC--ATACTGTGTAATGAATTGTATAAT  597


> AT5G43740.1 | Symbols:  | Disease resistance protein (CC-NBS-LRR 
class) family | chr5:17564738-17568802 FORWARD LENGTH=2866
Length=2866

 Score = 54.7 bits (29),  Expect = 1e-06
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  227  CGGGACGAAGACGAAACTCTATGTCAGTG  255
            |||||||||||||||||||||||||||||
Sbjct  35   CGGGACGAAGACGAAACTCTATGTCAGTG  63



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28834400378


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5