BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476489

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73560.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   643    0.0  


> AT1G73560.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:27649695-27650471 
REVERSE LENGTH=532
Length=532

 Score =  643 bits (348),  Expect = 0.0
 Identities = 422/458 (92%), Gaps = 4/458 (1%)
 Strand=Plus/Plus

Query  1    AATGGAGATTAGCAAATTTCTGGCCGTAGTCGTAGCCGTTGTAGTTCTCTACTCCGTGC-  59
            ||||||||||| ||||||||||||||||||||||||||| || || ||||||||||| | 
Sbjct  15   AATGGAGATTAACAAATTTCTGGCCGTAGTCGTAGCCGTCGTGGTCCTCTACTCCGT-CG  73

Query  60   AGGCTACAGCACAAGGAGGAAACCCTCAGACGATGGCTTG-CGTGCAAAAATTGGTGCCG  118
            | || || |||||||||||||||||||||  || |||||| | |||| ||| || |||||
Sbjct  74   AAGCGACGGCACAAGGAGGAAACCCTCAGTTGACGGCTTGTC-TGCAGAAACTGCTGCCG  132

Query  119  TGTCAGCCGTACATACACACGGTGAATCCGTCTCCTCCGCCATCGTGTTGCGGGCCAATG  178
            |||||||||||||||||  || |||||||| ||||||||||||||||||||||||| |||
Sbjct  133  TGTCAGCCGTACATACATTCGCTGAATCCGCCTCCTCCGCCATCGTGTTGCGGGCCGATG  192

Query  179  AAAGAGATCGTAGAGAAAGACGCGCCGTGTTTATGCGCCGTTTTTAACAACCCGGAGATG  238
            ||||||||||||||||||||||| ||||||||||||  || ||||||||| |||||| ||
Sbjct  193  AAAGAGATCGTAGAGAAAGACGCACCGTGTTTATGCATCGCTTTTAACAATCCGGAGGTG  252

Query  239  CTCAAAGCCCTAAACCTCACCAAAGAGAACGCTCTCGTGCTTCCCAAGGCATGTGGAGTT  298
            |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  253  CTCAAAGCCCTAAACCTCACCAAAGAGAACGCTCTCCTACTTCCCAAGGCATGTGGAGTT  312

Query  299  AATCCTGACGTTTCAGTCTGCTCCAAGATCGCCTCTCCTTCGCCTACTGCGTCGCCGGGA  358
            ||||||||||||||| |||||||||| || ||| |||||||||||| |||||||||||||
Sbjct  313  AATCCTGACGTTTCACTCTGCTCCAAAATAGCCACTCCTTCGCCTATTGCGTCGCCGGGA  372

Query  359  TCAACCAATGGAACCTCTTCCGCTTCAACTATCAGCTTCAATCGATTTAGCTTTCTGTCT  418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  373  TCAACCAATGGAACCTCTTCCGCTTCAACTATCAGCTTCAATCGATTTAGCTTTCTGTCT  432

Query  419  GCTTTTGTGGCAATGATCTTCTTTTGATTATGTCATTT  456
            ||||||||||||||||||||||| ||||||||||||||
Sbjct  433  GCTTTTGTGGCAATGATCTTCTTCTGATTATGTCATTT  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5