BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476490
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73570.1 | Symbols: | HCP-like superfamily protein | chr1:2... 1607 0.0
AT1G18260.1 | Symbols: | HCP-like superfamily protein | chr1:6... 1062 0.0
> AT1G73570.1 | Symbols: | HCP-like superfamily protein | chr1:27650992-27653942
FORWARD LENGTH=1815
Length=1815
Score = 1607 bits (870), Expect = 0.0
Identities = 953/993 (96%), Gaps = 6/993 (1%)
Strand=Plus/Plus
Query 871 TTTAATGG-CTTGGGTTACTTGTATGTTAAAGGCTATGGAGTAGATACGAGAAACTACAC 929
|||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 826 TTTAATGGCCTT-GGTTACTTGTATGTCAAAGGCTATGGAGTAGATAAGAGAAACTACAC 884
Query 930 TAAGGCGAAAGAATACTTTGAGATGGCTGCTAATAATGAAGATCCTAGCGGGCATTATAA 989
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 TAAGGCGAGAGAATACTTTGAGATGGCTGCTAATAATGAAGATCCTAGCGGGCATTATAA 944
Query 990 CCTTGGAGTGTTGTATCTTAAAGGCATTGGAGTGAAGAAGGATGTGAGGCGTGCAACCAA 1049
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||
Sbjct 945 CCTTGGAGTGTTGTATCTTAAAGGCACTGGAGTCAAGAAGGATGTGAGGCATGCAACCAA 1004
Query 1050 ATATTTCTTTGTTGCTGCCAATGCTGGTCAACCAAAGGCTTTTTATCAACTCGCCAAGAT 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ATATTTCTTTGTTGCTGCCAATGCTGGTCAACCAAAGGCTTTTTATCAACTCGCCAAGAT 1064
Query 1110 GTTCCATACGGGCGTTGGGCTTACAAAGAACTTGGAAATGGCGACGACTTTTTATAAACT 1169
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1065 GTTCCATACAGGCGTTGGACTTACAAAGAACTTGGAAATGGCGACAACTTTTTATAAGCT 1124
Query 1170 AGTAGCAGAAAGAGGACCATGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCCTACTCGAA 1229
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1125 AGTAGCAGAAAGAGGACCATGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCTTACTTGAA 1184
Query 1230 AGGTGATGTGGGAAAGGCTTTTATATTGTATTCGAGAATGTCAGAGCTCGGTTATGAAGT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGTGATGTGGGAAAGGCTTTTATATTGTATTCGAGAATGTCAGAGCTCGGTTATGAAGT 1244
Query 1290 AGCACAAAGTAATGCTGCCTGGATCCTCGATAAATATGGGGAAAGAAGCATGTGCATGGG 1349
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1245 AGCACAAAGTAATGCTGCCTGGATCGTCGATAAATACGGGGAAAGAAGCATGTGCATGGG 1304
Query 1350 AGTGTCTGGGTTTTGCACAGAAAAGGAGAGGCACGATCGGGCTCATTCTTTGTGGTGGCG 1409
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AGTGTATGGGTTTTGCACAGATAAGGAGAGGCACGATCGGGCTCATTCTTTGTGGTGGCG 1364
Query 1410 TGCCTCTGAACAAGGAAACGAACATGCTGCATTGCTTATTGGAGATGCATACTACTACGG 1469
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1365 TGCCTCTGAACAGGGAAACGAACATGCTGCATTGCTTATTGGAGATGCATATTACTACGG 1424
Query 1470 TCGGGGTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCTCA 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TCGGGGTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCTCA 1484
Query 1530 ATCAAATGCGCAAGCAATGTTCAACCTCGGTTATATGCATGAGCATGGAGAAGGTCTTCC 1589
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1485 ATCAAATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAGCATGGAGAAGGTCTTCC 1544
Query 1590 TTTCGATCTCCATCTTGCTAAACGTTACTACGATCAGGCCCTCCAGAGCGATGCTGCTGC 1649
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1545 TTTTGATCTCCATCTTGCTAAACGTTACTACGACCAGGCCCTCCAGAGCGATACTGCTGC 1604
Query 1650 CAAATTGCCTGTCACACTAGCTCTTGCGAGTGTATGGGTTCGCAGAAACTATGCTGATAC 1709
||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1605 CAAATTGCCCGTCACGCTTGCTCTTGCGAGTGTATGGGTCCGCAGAAACTATGCTGATAC 1664
Query 1710 TGCCCTGGTGCAAGTACTGGATTCCTTACCAGAAGTGTATCGAAAGGTGGAGGAATGGGT 1769
||||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||
Sbjct 1665 TGCCCTGGTGCAAGTACTGAATTCCTTACCAGAAGTGCATCAAAAGGTGGTGGAATGGGT 1724
Query 1770 AGAGAATGTGG-TGTTGGAAGAAGTGGTTTTGGATCCCGTTGGTGC-AGACGTGGCACAG 1827
|||||||| || |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1725 AGAGAATG-GGATGTTGGAAGAAGTGGTTTTGGATCCCGTTGGTGCTA-ACGTGGCACAG 1782
Query 1828 CCCCTCGCTGGACCTGTAGCCTTTCCCCAGTAA 1860
|||||||||| || ||||| ||||||||||||
Sbjct 1783 CCCCTCGCTGCCCCAGTAGCATTTCCCCAGTAA 1815
Score = 1205 bits (652), Expect = 0.0
Identities = 773/833 (93%), Gaps = 1/833 (0%)
Strand=Plus/Plus
Query 1 ATGAGAATCTCAGGTCACAGTATCATAGCCATCTCTTTCTTCATACTCTCATTCTACATT 60
|||||| ||||||| || |||||||||||||| ||| | |||| ||||||| |||||||
Sbjct 1 ATGAGAGTCTCAGGCCAGAGTATCATAGCCATATCTCTATTCACACTCTCACTCTACATC 60
Query 61 TATCGCGTTCAAGCCCGTCCCTTCGTTCTCGTTCTCTCCAACGACGATTTCAACGGCGGC 120
|||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 61 CATCGTGTTCAAGCCCGTCCCTTCGTTCTCGTTCTCTCCAACGAAGATCTCAACGGAGGT 120
Query 121 TTTGATGATAACGGTGCCGAAGAATCCTCTAATTTCGATGAATTCGGAGAATCCGAACCC 180
||| |||||||||| ||| | |||||||| |||||||||| || || ||||||||||||
Sbjct 121 TTTAATGATAACGGCGCCTACGAATCCTCCGATTTCGATGAGTTTGGTGAATCCGAACCC 180
Query 181 AAATCCGAAGAGGAGCTTGATCCCGGTTCCTGGCGACCAATCTTCGAGCCAAATGATTCC 240
||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||| |||
Sbjct 181 AAATCCGAAGAGGAGCTTGATCCCGGTTCATGGCGTCGAATCTTCGAGACAAATGAGTCC 240
Query 241 GCCGTCCACGCCTCTGCGTCGCCGCAGTACTACTCCGGACTCCACAAAATCCTCTCGGCG 300
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 241 ACCGTCCACGCCTCTGCGTCGCCGCAGTATTACTCCGGACTCCACAAAATTCTCTCGGCT 300
Query 301 GCGATTGAAGGAAACACTACGTTGATGGAGGAAGCGGTTTCAGAGATAGATTCGTCTGCC 360
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCGAGTGAAGGAAACACTACATTGATGGAGGAAGCGGTTTCAGAGATAGATTCGTCTGCC 360
Query 361 TCTTCGGGAGATCCACACGCACAATCAGTGATGGGATTCGTATACGGGATTGGGATGATG 420
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 TCGTCAGGAGATCCACACGCACAATCAGTGATGGGGTTCGTATACGGGATTGGGATGATG 420
Query 421 CGTGAGACGAGCCGAAGCAAATCGATTTTGCATCATCATTTCGCTGCTGAGGGAGGAAAT 480
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 421 CGTGAGACGAGCCGAAGCAAATCGATTTTGCATCATCATTTCGCGGCTGCGGGAGGAAAT 480
Query 481 GTGCAGTCCAAAATGGCACTTGCTTTCAGATATCTTAGACAAAATATGCATGATAAAGCT 540
||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 481 ATGCAGTCTAAAATGGCACTTGCTTTTAGATATCTAAGACAAAATATGTATGATAAAGCT 540
Query 541 GTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCTAAGGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 GTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCCAAGGAT 600
Query 601 TCTCCAATGGTTGAGCCAGTTAGAATCCACATTGGAACAGAGGAGAATAAAGATGCACTT 660
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCTCCAATGGCTGAGCCAGTTAGAATCCACATTGGAACAGAGGAGAATAAAGATGCACTA 660
Query 661 AGGAAATCCCGTGGAGAGGAAGATGAGGATTTTCAGATATTGGAATACCAGGCAGAGAAA 720
||||| || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGGAAGTCACGAGGGGAGGAAGATGAGGATTTTCAGATATTGGAATACCAGGCAGAGAAA 720
Query 721 GGGAATTCTGCGGCAATGCACAAAATTGGACTGTTTTATTACTTTGGTTTGAGAGGGTTA 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GGGAATTCTGTAGCAATGCACAAAATTGGACTGTTTTATTACTTTGGTTTGAGAGGATTA 780
Query 781 AGGCGTGATCACGCCAAGGCGTTGTACTGGTTTTCGAAGGCGGCACTTGAATG 833
|||||||||||||| ||||||||||| |||||||||||||||| | || ||||
Sbjct 781 AGGCGTGATCACGCTAAGGCGTTGTATTGGTTTTCGAAGGCGG-AGTTTAATG 832
> AT1G18260.1 | Symbols: | HCP-like superfamily protein | chr1:6278848-6282103
REVERSE LENGTH=2331
Length=2331
Score = 1062 bits (575), Expect = 0.0
Identities = 852/984 (87%), Gaps = 26/984 (3%)
Strand=Plus/Plus
Query 822 GGCACTTGAATGTCTTACACTTGCGGTAAAACAAGGTCTCTATTCGGCATTTAATGG-CT 880
|||||||||||| ||||||||||| | |||| ||||||||||||| ||||||||||| |
Sbjct 998 GGCACTTGAATGGCTTACACTTGCTGCAAAAGAAGGTCTCTATTCAGCATTTAATGGAAT 1057
Query 881 TGGGTTACTTGTATGTTAAAGGCTATGGAGTAGATACGAGAAACTACACTAAGGCGAA-A 939
| || ||||||||||| ||||||||||||||||||| || |||||| |||||||| || |
Sbjct 1058 T-GGCTACTTGTATGTCAAAGGCTATGGAGTAGATAAGAAAAACTATACTAAGGC-AAGA 1115
Query 940 GAATACTTTGAGATGGCTGCTAATAATGAAGATCCTAGCGGGCATTATAACCTTGGAGTG 999
||||| ||||||| ||||| | | |||||||| || || ||||||||||||||||||||
Sbjct 1116 GAATATTTTGAGAAGGCTGTTGACAATGAAGACCCCAGTGGGCATTATAACCTTGGAGTT 1175
Query 1000 TTGTATCTTAAAGGCATTGGAGTGAAGAAGGATGTGAGGC-GTGCAACCAAATATTTCTT 1058
||||||||||||||||| ||||| || | ||||||||||| | ||||| ||||| |||||
Sbjct 1176 TTGTATCTTAAAGGCATCGGAGTCAACAGGGATGTGAGGCAG-GCAACAAAATACTTCTT 1234
Query 1059 TGTTGCTGCCAATGCTGGTCAACCAAAGGCTTTTTATCAACTCGCCAAGATGTTCCATAC 1118
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1235 TGTTGCTGCAAATGCTGGTCAACCAAAGGCTTTCTATCAACTCGCCAAGATGTTCCATAC 1294
Query 1119 GGGCGTTGGGCTTACA-AAGAACT-TGGAAATGGCGACGACTTTTTATAAACTAGTAGCA 1176
|| |||||||||| | ||||| | |||| |||||||| | |||||||| |||||||||
Sbjct 1295 TGGTGTTGGGCTTA-AGAAGAA-TCTGGAGATGGCGACTTCATTTTATAAGCTAGTAGCA 1352
Query 1177 GAAAGAGGACCATGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCCTACTCGAAAGGTGAT 1236
||||| || || |||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1353 GAAAGGGGGCCGTGGAGTTCTCTCTCTAGATGGGCTCTTGAAGCTTACTTAAAAGGTGAT 1412
Query 1237 GTGGGAAAGGCTTTTATATTGTATTCGAGAATGTCAGAGCTCGGTTATGAAGTAGCACAA 1296
||||| |||||||| || ||||| || || ||| ||||| | ||||||||||| ||||||
Sbjct 1413 GTGGGTAAGGCTTTGATTTTGTACTCAAGGATGGCAGAGATGGGTTATGAAGTGGCACAA 1472
Query 1297 AGTAATGCTGCCTGGATCCTCGATAAATATGGGGAAAGAAGCATGTGCATGGGAGTGTCT 1356
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1473 AGTAATGCTGCCTGGATCCTCGATAAATACGGCGAAAGAAGCATGTGCATGGGAGTATCT 1532
Query 1357 GGGTTTTGCACAGA-AAAGGAGAGGCACGATCGGGCTCATTCTTTGTGGTGGCGTGCCTC 1415
|| ||||||||||| |||| |||| || || ||||| ||||||||||||||||| |||||
Sbjct 1533 GGATTTTGCACAGACAAAG-AGAGACATGAGCGGGCACATTCTTTGTGGTGGCGGGCCTC 1591
Query 1416 TGAACAAGGAAACGAACATGCTGCAT-TGCTTATTGGAGATGCATACTACTACGGTCGGG 1474
||||||||| || ||||||||||| | ||||||||||||||||||| ||||| || ||||
Sbjct 1592 TGAACAAGGCAATGAACATGCTGC-TCTGCTTATTGGAGATGCATATTACTATGGCCGGG 1650
Query 1475 GTACAGAGAGGGATTTCGTGCGTGCAGCAGAGGCGTACATGTATGCTAAATCTCAATCAA 1534
| || ||||| ||||| |||||||| ||||| || |||||| |||||||||| || || |
Sbjct 1651 GAACTGAGAGAGATTTTGTGCGTGCGGCAGAAGCATACATGCATGCTAAATCACAGTCCA 1710
Query 1535 ATGCGCAAGCAATGTTCAACCTCGGTTATATGCATGAGCATGGAGAAGGTCTTCC-TTTC 1593
|||||||||||||||||||||||||||| |||||||| |||||| |||| ||||| |||
Sbjct 1711 ATGCGCAAGCAATGTTCAACCTCGGTTACATGCATGAACATGGACAAGGACTTCCCTTT- 1769
Query 1594 GATCTCCATCTT-GCTAAACGTTACTACGATCAGGCCCTCCAGAGCGATGCTGCTGCCAA 1652
||||||||| || || ||||||||||| ||| | |||| ||||||||||| || || |
Sbjct 1770 GATCTCCAT-TTAGCAAAACGTTACTATGATGAATCCCTTCAGAGCGATGCAGCCGCGAG 1828
Query 1653 ATTGCCTGTCACACTAGCTCTTGCGAG-TGTATGGGTTCGCAGAAACTATGCTGATACTG 1711
|||||| |||||||| ||||| || || | ||||| | || ||||||||||||||||| |
Sbjct 1829 ATTGCCAGTCACACTTGCTCTCGCTAGCT-TATGGCTCCGTAGAAACTATGCTGATACCG 1887
Query 1712 CCCTGGTGCA-AGTACTGGATTCCTTACCAGAAGTGTATC-GAAAGGTGGAGGAATGGG- 1768
||||||| | ||| ||||||| |||||||||||||||| ||| ||| ||| | | ||
Sbjct 1888 TCCTGGTG-AGAGTTGTGGATTCATTACCAGAAGTGTATCCGAA-GGTAGAG-ACTTGGA 1944
Query 1769 TAGAGAATGTGGTGTTGGAAGAAG 1792
|||||||||||||||| |||||||
Sbjct 1945 TAGAGAATGTGGTGTTTGAAGAAG 1968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5