BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476492
Length=2252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73590.1 | Symbols: PIN1, ATPIN1 | Auxin efflux carrier fami... 3517 0.0
AT1G23080.1 | Symbols: PIN7, ATPIN7 | Auxin efflux carrier fami... 355 1e-96
> AT1G73590.1 | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family
protein | chr1:27659673-27663178 FORWARD LENGTH=2270
Length=2270
Score = 3517 bits (1904), Expect = 0.0
Identities = 2148/2264 (95%), Gaps = 23/2264 (1%)
Strand=Plus/Plus
Query 1 AACACTCACTTTACTCTTTTTTCCCTCTTCACCACTTCTCTCCCCCAAACTAAAGACAAA 60
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 AACACTCACTTTACTCTTTTTTCCCTCTTCACCACTTCTCT--CTCAAACTAAAGACAAA 58
Query 61 AActcttctctcatctctctctctcttctcCGGCGAACAAAAGATGATAACGGCGGCGGA 120
| |||||||||| | || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 59 AGCTCTTCTCTC-T-TCCCTCTCTCTTCTCCGGCGAACAAAAGATGATTACGGCGGCGGA 116
Query 121 TTTCTACCACGTCATGACGGCTATGGTTCCGTTATACGTAGCCATGATCCTCGCTTACGG 180
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 117 CTTCTACCACGTTATGACGGCTATGGTTCCGTTATACGTAGCTATGATCCTCGCTTACGG 176
Query 181 CTCCGTCAAATGGTGGAAGATCTTCACACCAGACCAATGCTCCGGCATAAACCGTTTCGT 240
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTCTGTCAAATGGTGGAAAATCTTCACACCAGACCAATGCTCCGGCATAAACCGTTTCGT 236
Query 241 CGCTCTCTTCGCCGTTCCTCTCCTCTCTTTCCACTTCATCGCCGCTAACAACCCTTACGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGCTCTCTTCGCCGTTCCTCTCCTCTCTTTCCACTTCATCGCCGCTAACAACCCTTACGC 296
Query 301 CATGAACCTCCGTTTCCTCGCCGCAGATTCTCTCCAGAAAATCATTGTCCTCTCTCTACT 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 297 CATGAACCTCCGTTTCCTCGCCGCAGATTCTCTCCAGAAAGTCATTGTCCTCTCTCTCCT 356
Query 361 CTTCCTCTGGTGCAAACTCAGCCGCAACGGCTCGTTAGATTGGACCATAActctcttctc 420
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 357 CTTCCTCTGGTGCAAACTCAGCCGCAACGGTTCTTTAGATTGGACCATAACTCTCTTCTC 416
Query 421 tctctcGACTCTTCCCAACACTCTAGTCATGGGGATTCCTCTACTCAAAGGCATGTACGG 480
||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 417 TCTCTCGACACTCCCCAACACTCTAGTCATGGGGATACCTCTTCTCAAAGGCATGTATGG 476
Query 481 TGATTTCTCCGGCGACCTCATGGTTCAAATCGTTGTTCTTCAATGTATCATTTGGTACAC 540
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 TAATTTCTCCGGCGACCTCATGGTTCAAATCGTTGTTCTTCAGTGTATCATTTGGTACAC 536
Query 541 ACTCATGCTCTTTCTCTTTGAGTACCGTGGCGCGAAGCTTTTGATCTCCGAGCAGTTTCC 600
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 537 ACTCATGCTCTTTCTCTTTGAGTACCGTGGAGCTAAGCTTTTGATCTCCGAGCAGTTTCC 596
Query 601 GGACACAGCTGGATCTATTGTTTCGATTCATGTTGATTCCGACATTATGTCTTTAGATGG 660
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGACACAGCAGGATCTATTGTTTCGATTCATGTTGATTCCGACATTATGTCTTTAGATGG 656
Query 661 AAGACAACCTTTGGAAACTGAAGCTGAGATTAAAGAAGATGGGAAGCTTCATGTTACTGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAGACAACCTTTGGAAACTGAAGCTGAGATTAAAGAAGATGGGAAGCTTCATGTTACTGT 716
Query 721 TCGTCGTTCTAATGCTTCGAGGTCTGATATTTACTCGAGAAGGTCTCAAGGCTTATCTGC 780
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TCGTCGTTCTAATGCTTCAAGGTCTGATATTTACTCGAGAAGGTCTCAAGGCTTATCTGC 776
Query 781 GACTCCAAGACCTTCGAATCTAACAAACGCTGAGATTTATTCGCTTCAGAGTTCAAGAAA 840
||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 777 GACACCTAGACCTTCGAATCTAACCAACGCTGAGATATATTCGCTTCAGAGTTCAAGAAA 836
Query 841 CCCAACGCCTCGTGGCTCTAGCTTTAATCATACTGATTTTTACTCTATGATGGCTTCCGG 900
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 837 CCCAACGCCACGTGGCTCTAGTTTTAATCATACTGATTTTTACTCGATGATGGCTTCTGG 896
Query 901 TGGTGGTCGGAACTCTAACTTTGGTCCTGGAGAAGCTGTGTTTGGTTCTAAAGGTCCTAC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TGGTGGTCGGAACTCTAACTTTGGTCCTGGAGAAGCTGTGTTTGGTTCTAAAGGTCCTAC 956
Query 961 TCCGAGACCCTCTAACTATGAAGAAGACGGTGGTGCTGCTAAACCGACGGCTGCTGGAAC 1020
||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 957 TCCGAGACCTTCCAACTACGAAGAAGACGGTGGTCCTGCTAAACCGACGGCTGCTGGAAC 1016
Query 1021 TGCCGCTGGAGCTGGGAGGTTTCATTATCAATCTGGAGGTAGCGGTGGTGGTGGAGGAGC 1080
||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1017 TGCTGCTGGAGCTGGGAGGTTTCATTATCAATCTGGAGGAAGTGGTGGCGGTGGAGGAGC 1076
Query 1081 GCATTATCCGGCGCCGAATCCAGGGATGTTTTCACCTAACACCGGCGGTGGTGGAGGTAC 1140
|||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| ||
Sbjct 1077 GCATTATCCGGCGCCGAACCCAGGGATGTTTTCGCCCAACACTGGCGGTGGTGGAGGCAC 1136
Query 1141 GGCGGCGAAAGGGAACGCTCCGGTTGTTGGTGGGAAGAGACAAGACGGAAACGGAAGAGA 1200
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1137 GGCGGCGAAAGGAAACGCTCCGGTGGTTGGTGGGAAAAGACAAGACGGAAACGGAAGAGA 1196
Query 1201 TCTTCATATGTTTGTGTGGAGCTCAAGTGCATCTCCGGTCTCAGATGTGTTCGGCGGTGG 1260
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1197 TCTTCACATGTTTGTGTGGAGCTCAAGTGCTTCGCCGGTCTCAGATGTGTTCGGCGGTGG 1256
Query 1261 AGGAGGAAACCACCACGCCGATTACGCCACCGGTACGAACGATCATCAAAAGGACGTTAA 1320
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1257 AGGAGGAAACCACCACGCCGATTACTCCACCGCTACGAACGATCATCAAAAGGACGTTAA 1316
Query 1321 AATCTCTGTACCTCAGGGGAATAGTAACGAGAACCAGTACGTTGAAAGGGAAGAGTTTAG 1380
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 1317 GATCTCTGTACCTCAGGGGAATAGTAACGACAACCAGTACGTGGAGAGGGAAGAGTTTAG 1376
Query 1381 TTTCGGTAATAAAGACGATGATAGCAAGGTGTTGGCAGCGGACGGTGGGAACAACATAAG 1440
||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 1377 TTTCGGTAACAAAGACGATGATAGCAAAGTATTGGCAACGGACGGTGGGAACAACATAAG 1436
Query 1441 CAACAAAACGCCGCAGGCAAAGGTGATGCCACCAACAAGTGTGATGACAAGACTCATTCT 1500
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CAACAAAACGACGCAGGCTAAGGTGATGCCACCAACAAGTGTGATGACAAGACTCATTCT 1496
Query 1501 CATTATGGTTTGGAGGAAACTTATCCGTAATCCCAACTCTTACTCCAGTTTATTCGGCAT 1560
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1497 CATTATGGTTTGGAGGAAACTTATTCGTAATCCCAACTCTTACTCCAGTTTATTCGGCAT 1556
Query 1561 CACCTGGTCCCTCATTTCCTTCAAGTGGAACATTGAAATGCCAGCTCTTATAGCAAAGTC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CACCTGGTCCCTCATTTCCTTCAAGTGGAACATTGAAATGCCAGCTCTTATAGCAAAGTC 1616
Query 1621 TATCTCCATACTCTCAGATGCAGGTCTAGGCATGGCTATGTTCAGTCTTGGGTTGTTCAT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TATCTCCATACTCTCAGATGCAGGTCTAGGCATGGCTATGTTCAGTCTTGGGTTGTTCAT 1676
Query 1681 GGCGTTAAACCCAAGAATAATAGCTTGTGGAAACAGAAGAGCAGCATTTGCGGCGGCTAT 1740
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1677 GGCGTTAAACCCAAGAATAATAGCTTGTGGAAACAGAAGAGCAGCTTTTGCGGCGGCTAT 1736
Query 1741 GAGATTTATCGCCGGACCTGCCGTCATGCTCGTTGCTTCTTATGCTGTTGGCCTCCGTGG 1800
||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1737 GAGATTTGTCGTTGGACCTGCCGTCATGCTCGTTGCTTCTTATGCCGTTGGCCTCCGTGG 1796
Query 1801 CGTCCTCCTCCGTGTCGCCATCATCCAGGCAGCTTTGCCGCAAGGAATAGTACCGTTTGT 1860
||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1797 CGTCCTCCTCCATGTTGCCATTATCCAGGCAGCTTTGCCGCAAGGAATAGTACCGTTTGT 1856
Query 1861 GTTCGCCAAAGAGTATAATGTGCATCCTGACATTCTTAGCACTGCGGTGATATTTGGGAT 1920
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 GTTTGCCAAAGAGTATAATGTGCATCCTGACATTCTTAGCACTGCGGTGATATTTGGGAT 1916
Query 1921 GTTGATCGCGTTGCCCATAACTCTTCTCTACTACATTCTCTTGGGGCTGTGATGAGTGAG 1980
||||||||||||||||||||||||||||||||||||||||||||| || ||| || ||
Sbjct 1917 GTTGATCGCGTTGCCCATAACTCTTCTCTACTACATTCTCTTGGGTCTATGA--AG--AG 1972
Query 1981 ATAGTTACCAAAACACAGGGACGttt-ttttAATCTTTTGGGGGATTATGAAATGTGAAA 2039
||| |||||||||||||||||| ||| ||||| ||||||| ||||| ||||| |||||||
Sbjct 1973 ATA-TTACCAAAACACAGGGAC-TTTGTTTTATTCTTTTGTGGGATGATGAATTGTGAAA 2030
Query 2040 AGAACAATGCCCTTTTTGTTGAAAACCCACAAATTAAATCAAAA-CAG----AGA-AATC 2093
||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||
Sbjct 2031 AGAACAATGCCCTTTTTGTTGAAAACCCACAAATTAAATCAGAAGCAGCTTTAGAGAATC 2090
Query 2094 TTCGAAGACAATTGAAGCTCTTGAAGAATG-GAAGAAGAAGAAGACTTA-G--G-AGCTT 2148
|| || || ||||||||||||||||||| | |||||||||| ||||||| | | ||||
Sbjct 2091 TTTGAGGATAATTGAAGCTCTTGAAGAA-GAGAAGAAGAAGGAGACTTAAGTAGGAGCTC 2149
Query 2149 GGCAAGTTTTACCTTTTTCTTAGTTTTTATGAACATTCGTGTTTCTTCTTTTGCTAGGTT 2208
||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||
Sbjct 2150 AGCAAGTTTTACCTTTTTCTTAATTTTAATGAACATTCGTGTTTCCTCTTTTGGTAGGTT 2209
Query 2209 TTAGGAATTTGTAAAAGCGTTGGCTACCTTTAGTGAATTAAAAA 2252
|||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2210 TTAGGAATTTGTAAAAGCTTTGGCTACTTTTAGTGAATTAAAAA 2253
> AT1G23080.1 | Symbols: PIN7, ATPIN7 | Auxin efflux carrier family
protein | chr1:8180577-8183570 REVERSE LENGTH=2215
Length=2215
Score = 355 bits (192), Expect = 1e-96
Identities = 501/647 (77%), Gaps = 33/647 (5%)
Strand=Plus/Plus
Query 88 ctcCGGCGAACAA-AAGATGAT-A-ACGGCGGCGGATTTCTACCA-CGTCATGACGGCTA 143
||||||||||||| || ||||| | | ||| | || |||| || |||| | |||||
Sbjct 148 CTCCGGCGAACAACAATATGATCACATGGC-AC-GACCTCTA-CACCGTCCTCACGGCGG 204
Query 144 TGGTTCCGTTATACGTAGCCATGATCCTCGCTTACGGCTCCGTCAAATGGTGGAAGATCT 203
|| | || | ||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 205 TGATACCACTCTACGTAGCCATGATCCTCGCTTACGGCTCAGTCCGGTGGTGGAAAATCT 264
Query 204 TCACACCAGACCAATGCTCCGGCATAAACCGTTTCGTCGCTCTCTTCGCCGTTCCTCTCC 263
|| ||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||| |
Sbjct 265 TCTCACCAGACCAATGTTCCGGCATAAACCGCTTCGTCGCTATTTTCGCCGTCCCTCTTC 324
Query 264 TCTCTTTCCACTTCATCGCCGCTAACAACCCTTACGCCATGAACCTCCGTTTCCTCGCCG 323
||||||||||||||||| || | ||||| |||||||| ||||| ||||| ||| |||| |
Sbjct 325 TCTCTTTCCACTTCATCTCCTCAAACAATCCTTACGCAATGAATCTCCGATTCATCGCAG 384
Query 324 CAGATTCTCTCCAGAAAA-TCATTGTCCTCTCTCTACTCTTCCTCTGGTGCAAACT-CAG 381
| ||| | ||||| |||| | || | ||| |||| || || ||||| || |||| ||
Sbjct 385 CCGATACACTCCA-AAAACTAATCATGCTCACTCTCCTAATCATCTGG-GCTAACTTCA- 441
Query 382 C-CGCAACGGCTCGT-TAGATTGGACCATAActctcttctctctctcGACTCTTCCCAAC 439
| ||| ||| | || | || |||| ||| || |||||||||| || || |||||||||
Sbjct 442 CTCGCTCCGG-TAGTCTTGAATGGAGCATCACAATCTTCTCTCTTTCAACACTTCCCAAC 500
Query 440 ACTCTAGTCATGGGGATTCCTCTACTCAAAGGC-ATGTACGGTGATT-TCTCCGGCG-AC 496
||||| || ||||| || ||||| || | || |||||||| || | | |||||| ||
Sbjct 501 ACTCTCGTTATGGGAATACCTCT-CTTGATCGCCATGTACGGAGAATAT-TCCGGCTCAC 558
Query 497 CTCATGGTTCAAATCGTTGTTCTTCAATGTATCATTTGGTACACACT-CATGCTCTTTCT 555
|||||||||| |||||||||||||| ||||| || |||||||| || | | ||||||||
Sbjct 559 -TCATGGTTCAGATCGTTGTTCTTCAGTGTATAATCTGGTACACGCTTCTT-CTCTTTCT 616
Query 556 CTTT-GAGTACCGTGGCGCGAAGCTTTTGATC-TCCGAGCAGTTTCCGGACACAGCTGGA 613
||| || ||| | || || ||| | |||||| | || |||||||| || || | ||
Sbjct 617 -TTTCGAATACAGAGGAGCTAAGATCTTGATCATG-GAACAGTTTCCAGAGACTGGTGCT 674
Query 614 TCTATTGTTTCGATTCAT-GTTGATTCCGACATTATGTCTTTAGATGGA-A-GACAACCT 670
|| ||||| ||| |||| ||||| ||||| || | |||||||||||| | || ||
Sbjct 675 TCGATTGTATCG-TTCAAAGTTGAGTCCGATGTTGTTTCTTTAGATGGACATGATTTTCT 733
Query 671 TTGGAAACTGAAGCTGAGATTAAAGAAGATGGGAAGCTTCATGTTAC 717
| | ||||||| ||| | || || ||||| ||||||||||||||
Sbjct 734 T-G-AAACTGATGCTCAAATCGGTGACGATGGTAAGCTTCATGTTAC 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111746413170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5