BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476497
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73610.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1587 0.0
AT1G23500.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 427 9e-119
> AT1G73610.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:27678377-27679807 FORWARD LENGTH=1035
Length=1035
Score = 1587 bits (859), Expect = 0.0
Identities = 985/1044 (94%), Gaps = 15/1044 (1%)
Strand=Plus/Plus
Query 1 ATGAATTGCCTTATGTTCTCCAAAATGCTATTAGCATTCTCTTTGGTTAGTCTATTTTAT 60
||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTGCCTCATGTTCTTCAAAATGCTATTAGCATTCTCTTTCATTAGTCTATTTTAT 60
Query 61 GTTGGTAATGCACAACAATCATATGGCAATTCAACGGTTTCGGCACTTTTCGCGTTTGGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GTTGGTAATGCACAACAATCATATGGCAATTCAACGGTTTCGGCACTTTTCGCTTTTGGA 120
Query 121 GACTCAATACTTGACACAGGCAACAATAATCTTCTTCCAAGT-TTTAGTAAAGTCAATTT 179
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct 121 GACTCAATACTTGACACAGGCAACAATAATCTTCTTTTAAGTGTTT-CTAAAGTCAATTT 179
Query 180 TTATCCATACGGTAGAGACTTTATAGGTGG-AGTAGCTACCGGGAGATTTGGAAATGGGA 238
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 180 TTATCCATACGGTAGAGACTTTATAGGTGGAAG-AGCTACTGGGAGATTTGGAAATGGGA 238
Query 239 GAGTTTTTTCTGATATGATTGCTGAAGGTTTGGGATTGAAGAATATCTTACCAGCATATC 298
|||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||
Sbjct 239 GAGTTTTTTCTGATATAATTGCTGAGGGTTTGGGATTGAAGAATCTCTTACCAGCATATC 298
Query 299 GTGATCCATACCTCTCTG-ACAATGATCTAACGACTGGTGTTTGTTTTGCATCCGGTGGA 357
||||||||||||||| | |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 299 GTGATCCATACCTCT-GGAACAATGATCTAACGACTGGTGTTTGTTTCGCATCTGGTGGA 357
Query 358 TCTGGACTTGATGCAATCACTGCAAGAACAACAGGAAGTATATGGGTGTCAGACCAGGTC 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCTGGACTTGATCCAATCACTGCAAGAACAACAGGAAGTATATGGGTGTCAGACCAGGTC 417
Query 418 ACAGACTTCCAAAACTACATCGCCAGACTAAATGGTGTAGTAGGGAATCAAGAACAAGCA 477
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 418 ACAGACTTCCAAAACTACATCACCAGACTAAATGGTGTAGTAGGAAATCAAGAACAAGCA 477
Query 478 AATGCAATTATATCAAATGCGGTTTACCTAATCTCCGCCGGAAATAACGATATTGCTATC 537
|||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 478 AATGCAGTTATATCAAATGCTGTTTACCTAATCTCCGCAGGAAATAATGATATTGCTATC 537
Query 538 ACTTATTTTACTACGGGGGCTAGAAGATTACAATACACTCTTCCAGCCTACAATGATCAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ACTTATTTTACTACGGGGGCTAGAAGATTACAATACACTCTTCCAGCCTACAATGATCAA 597
Query 598 TTGGTCTCTTGGACTCGTGATCTCATAAAGAGTTTATATGATCTGGGTGCAAGAAAATTT 657
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 598 TTGGTCTCTTGGACTCGTGATCTCATAAAGAGTTTATATGATATGGGTGCAAGAAAATTT 657
Query 658 GCGGTTATGGGAACATTACCGCTAGGTTGTTTACCAGGAGCAAGAGCCTTAGATAGAGTA 717
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 658 GCCGTTATGGGAACATTACCGCTAGGTTGTTTACCAGGAGCAAGAGCCTTA-AC-GAG-A 714
Query 718 GCATGTGAACTCTTC-TCAAATCAAGCAGCTGCTATGTTCAACCAACAATTATCTGCCGA 776
||||||||| | || | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 715 GCATGTGAATTATTTGT-AAATCAAGGAGCTGCTATGTTCAACCAACAATTATCTGCCGA 773
Query 777 CATTGACAATCTTGGTGCAACATTTCCGGGTGCCAAATTCGTGTACGTAGATATGTACAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CATTGACAATCTTGGTGCAACATTTCCGGGTGCCAAATTCGTGTACGTAGATATGTACAA 833
Query 837 TCCTCTTTATGG-TCTCATCAGTAACCCTCAAGCTTCAGGGTTCATTGATGCAGCTGATG 895
|||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 834 TCCTCTTT-TGGGTCTCATCATTAACCCTCAAGCTTCAGGGTTCATTGATGTAGCTGATG 892
Query 896 CTTGTTGTTGTACGCCAACGGC-CATAGTACCGTGCCCGGATGCGTCTCGTTTTGTGTTT 954
| |||||||||||||||||| | | || |||||||| |||||||||||||| ||||||
Sbjct 893 CGTGTTGTTGTACGCCAACG-CACTTAATACCGTGCTTGGATGCGTCTCGTTACGTGTTT 951
Query 955 TGGGATGTCGCCCATCCGACCCAGCAGTCATACCAAACTATCGCACCACCGATTATTGAA 1014
|||||||| ||||||||||||||| |||||||| |||| ||||| |||| ||||||||||
Sbjct 952 TGGGATGTAGCCCATCCGACCCAGAAGTCATACGAAACCATCGCTCCACAGATTATTGAA 1011
Query 1015 AATATCAAAGCAAAGCTCGCATGA 1038
||||||||||||||||||||||||
Sbjct 1012 AATATCAAAGCAAAGCTCGCATGA 1035
> AT1G23500.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:8339668-8341072 FORWARD LENGTH=1038
Length=1038
Score = 427 bits (231), Expect = 9e-119
Identities = 761/1005 (76%), Gaps = 84/1005 (8%)
Strand=Plus/Plus
Query 24 AATGCTATTAGCATTCTCTT-TGGTTAGTC-TATTTTATGTTGGTAATGCACAACAATCA 81
||||||| | ||||| |||| | ||| | | | |||| ||||||| |||| || ||||
Sbjct 24 AATGCTAATGGCATTGTCTTCT-GTTTG-CTTGTTTTTTGTTGGTTATGCGCAGCAATTT 81
Query 82 T-ATGGCAA-T-TCAACGGTTTCGGCACTTTTCGCGTTT-GGAGACTCAATACTTGACAC 137
| | || || | | | | ||||| ||||||||||| ||| |||||||| ||||| || ||
Sbjct 82 TCA-GG-AAGTGT-AGCAGTTTCAGCACTTTTCGC-TTTCGGAGACTCGATACTCGATAC 137
Query 138 AGGCAACAATAATC-TTCTTCCA-AGT-TTTAGTAAAGT-CAATTT-TTATCCATACGGT 192
||||| || || | || | | | | ||| ||| | |||||| || ||| || |||
Sbjct 138 CGGCAATAACAA-CAATC-TAAACACTCTTT-CCAAA-TGCAATTTCTT-TCCGTATGGT 192
Query 193 AGAGACTTTATAGGTGGAGTAGCTACCGGGAGATTTGGAAATGGGAGAGTTTTTTCTGAT 252
||| | |||||||| ||| |||||| || |||||||||||||| |||||||| || |||
Sbjct 193 AGAAATTTTATAGGCGGAAAAGCTACTGGAAGATTTGGAAATGGAAGAGTTTTCTCGGAT 252
Query 253 ATGATTGCTGAAGGTTTGGGATTG-AAGAATA-TCTTACCAGCATATCGTGAT-CCATAC 309
|||||||| |||||||| || || || || | ||||||| || || || ||| ||| ||
Sbjct 253 ATGATTGCCGAAGGTTT--GAATGTAAAAAAACTCTTACCCGCTTACCGCGATCCCA-AC 309
Query 310 CTCTCTG-ACAATGATCTAACGACTGGTGTTTGTTTTGCATCCGGTGGATCTGGACTTGA 368
|| || | | |||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 310 CTTTC-GAAGAATGATCTTCCAACCGGTGTTTGTTTTGCATCCGGTGGATCTGGACTTGA 368
Query 369 TGCAAT-CACTGCAAGAACAACA-GGAAGT-ATATGGGTGTCAGACCAGGTCACAGACTT 425
|| || |||||| ||| || || ||| || ||||||||| | || ||||| | ||| ||
Sbjct 369 TG-AACGCACTGCCAGATCA-CAAGGA-GTTATATGGGTGCCTGATCAGGTGAAAGATTT 425
Query 426 CCAA-AACTACATCGCCAGACTAAATGGTGTAGTAGG-GAATCAA-GAACAAGCAAATGC 482
| || || || ||| | |||||| || || ||| | || | || ||| ||| ||| ||
Sbjct 426 CAAAGAA-TATATCATGAAACTAAACGGCGTCGTACGAGA-TAAAAGAA-AAGTAAACGC 482
Query 483 AATTATATCAAATGCGGTTTACCTAATCTCCGCCGGAAATAACGATATTGCTATCACTTA 542
||||||||||| || ||||| |||||||| || |||||||||||| |||| ||||| ||
Sbjct 483 GATTATATCAAACGCTGTTTATCTAATCTCAGCTGGAAATAACGATCTTGCAATCACCTA 542
Query 543 TTTTACTACGGGGGCTAGAAGATTACAATACACTCTTCCAGCCTACAATGATCAATTGGT 602
| |||| | || | | |||||| ||| || || |||||| ||||| |||||
Sbjct 543 TCCTACT-C------TA-ATGGC-ACAATATACTGTTTCAACCTACACTGATCTTTTGGT 593
Query 603 CTCTTGGACTCG-TGATCTCATAAAGAGTTTATATG-ATCTGGGTGCAAGAAAATTTGCG 660
| |||||||| | | |||| |||||||| |||||| | ||||||||||||| ||||||
Sbjct 594 CACTTGGACT-GATAATCTTTTAAAGAGTCTATATGCAA-TGGGTGCAAGAAAGTTTGCG 651
Query 661 GTTATGGGAACA-TTACCGCTAGGTTGTTTACCAGGAGCAAGAGCCTT-AGATAGAGTAG 718
||| | |||||| || ||| ||||||| || |||||||||||| | | || | || |
Sbjct 652 GTTCTTGGAACACTT-CCGTTAGGTTGCTTGCCAGGAGCAAGA-CATACAGGTGGAA-AT 708
Query 719 CATGTGAAC-T---CTTC-TC---A-AA-TCAAGCAGCTGCTATGTTCAACCAACAATTA 768
|| ||| | ||| || | || ||||| |||||||| ||||||||| |||||
Sbjct 709 TTTGGGAATATATGCTTAGTCCCTATAAATCAAGTGGCTGCTATATTCAACCAAAAATTA 768
Query 769 TCTGCCGA-CATTGACAATCTTGGTGCAACATTTCCGGGTGCCAAATTCGTGTACGTAGA 827
||||| | | || |||||||| ||| | |||| || |||||||| || || |||||
Sbjct 769 TCTGCAAAAC-TTAACAATCTTCACACAATACTTCCCGGCGCCAAATTTGTCTATGTAGA 827
Query 828 TATGTACAATCCTCT--TTATGGTCTCATCAGTAACCCTCAAGCTTCAGGGTTCATTGAT 885
||||| |||||||| ||| |||||||| || |||| ||||||||||||||||||
Sbjct 828 CATGTATAATCCTCTCCTTAA--TCTCATCAACAATCCTCGGGCTTCAGGGTTCATTGAT 885
Query 886 GCAGCTGATGCTTGTTGTTGTACGCC-A-A-CGGCCATAGTACCGTGCCCGGATGCGTCT 942
| ||||||| |||||||||| ||| | | || || || |||||||| ||||| |||
Sbjct 886 GTGGCTGATGGATGTTGTTGTATGCCGACATCG-CCG--GTTCCGTGCCCTGATGCATCT 942
Query 943 C-GTTTTGTGTTTTGGGATGTCGCCCATCCGACCCAGCAGTCATA 986
| || | |||||||||||| | ||||| |||| | || |||||||
Sbjct 943 CAGTAT-GTGTTTTGGGATTTTGCCCACCCGAGCGAGAAGTCATA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5