BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476498
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73620.1 | Symbols: | Pathogenesis-related thaumatin superf... 1280 0.0
> AT1G73620.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:27681408-27683130 FORWARD LENGTH=995
Length=995
Score = 1280 bits (693), Expect = 0.0
Identities = 786/830 (95%), Gaps = 9/830 (1%)
Strand=Plus/Plus
Query 1 ATAAAGAGAAAATCTCCAAAAGCAATAAGAAATGTGAAGCTGCTTCA-CAG-TCTTACAC 58
|||||||||||||||||||||||||| | |||| ||| || | | | |||| |||
Sbjct 1 ATAAAGAGAAAATCTCCAAAAGCAATGACCAATGAGAA-ATG-TGAAGTTGCTCTTCCAC 58
Query 59 TCAAGTTGAAATCAGAAGAAGAACCATCAATGGcttcttcaat-atctctctttctcctc 117
| ||||||||||||| | || ||||||||||||||||||| || ||||||||||||||||
Sbjct 59 TAAAGTTGAAATCAG-A-AA-AACCATCAATGGCTTCTTC-ATCATCTCTCTTTCTCCTC 114
Query 118 cctctccttcttcttctctccCACGCTTCAGCTTCAACGGTAATATTCTACAACAAGTGC 177
||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 115 CCTCTCCTTCTTCTTGTCTCCCAAGCTTCAGCTTCAACGGTTATATTTTACAACAAGTGC 174
Query 178 ACGTACACTGTCTGGCCTGGGATCCAGCCTAGCTCCGGCCAGTCAGTACTCGCCGGCGGC 237
|||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 175 ACGTACACTGTCTGGCCTGGGATCCAACCTAGCTCCGGTCAGTCATTACTCGCCGGCGGC 234
Query 238 GGATTTAAACTGTCGCCGAACAGAGCTTACACTCTTCAACTTCCACCGCTCTGGTCCGGT 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 235 GGATTTAAACTGTCGCCGAACAGAGCTTACACTCTCCAACTTCCACCGCTCTGGTCCGGT 294
Query 298 CGCTTCTGGGGACGCCACGGTTGCTCCTTCGACAGATCTGGCCGTGGTCGCTGCGCTACC 357
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 295 CGCTTCTGGGGCCGCCACGGTTGCTCCTTTGACAGATCTGGCCGTGGTCGCTGCGCCACC 354
Query 358 GGAGACTGTGGCGGTTCTTTCCTCTGTAACGGAGCTGGCGGTGTACCTCCGGCTACTCTT 417
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGAGACTGTGGTGGTTCTTTCCTCTGTAACGGAGCTGGCGGTGTACCTCCGGCTACTCTT 414
Query 418 GCCGAGATCACCCTCGGTCATGACATGGACTTTTATGACGTCAGCCTCGTTGATGGATAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GCCGAGATCACCCTCGGTCATGACATGGACTTTTATGACGTCAGCCTCGTTGATGGATAT 474
Query 478 AACTTGGCGATGTCGATAATGCCGGTGAAGGGTACGGGAAAGTGTACCTACGCTGGTTGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AACTTGGCGATGTCGATAATGCCGGTGAAGGGTACGGGAAAGTGTACCTACGCTGGTTGC 534
Query 538 GTAAGCGACCTGAACCGGATGTGCCCGGTTGGTCTACAAGTCCTTTCACGTGACGGGAAA 597
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 535 GTAAGCGACCTGAACCGGATGTGCCCGGTTGGTCTACAAGTCCGTTCACGTGACGGGACA 594
Query 598 CAGGTAGTAGCCTGTAAAAGCGCATGCTCTGCCTTTAACTCACCACGCTATTGTTGTACC 657
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 595 CAGGTAGTAGCCTGTAAAAGCGCATGCTCTGCGTTTAACTCACCACGCTATTGCTGTACC 654
Query 658 GGCTTGTTCGGTAACCCACAGTCATGCAAGCCTACGGCTTACTCTAAGATCTTCAAGGTA 717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 GGCTTGTTCGGTAACCCACAGTCATGCAAGCCAACGGCTTACTCTAAGATCTTCAAGGTA 714
Query 718 GCTTGCCCTAAGGCTTACTCATACGCCTATGACGACCCAACTAGCATTGCTACGTGTTCT 777
||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 715 GCTTGCCCTAAGGCTTACTCATACGCCTACGATGACCCAACTAGCATTGCGACATGTTCT 774
Query 778 AAAGCTAACTACGTCGTCACTTTTTGCCCCCACCGCGGCCGTTGATTAAA 827
|||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 775 AAAGCTAATTATGTCGTCACTTTTTGCCCTCACCGCGGCCGTTGATTAAA 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5