BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476500
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73640.1 | Symbols: AtRABA6a, RABA6a | RAB GTPase homolog A6... 1308 0.0
AT1G18200.1 | Symbols: AtRABA6b, RABA6b | RAB GTPase homolog A6... 553 1e-156
AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog A1... 106 4e-22
> AT1G73640.1 | Symbols: AtRABA6a, RABA6a | RAB GTPase homolog
A6A | chr1:27686992-27688127 FORWARD LENGTH=883
Length=883
Score = 1308 bits (708), Expect = 0.0
Identities = 807/855 (94%), Gaps = 6/855 (1%)
Strand=Plus/Plus
Query 1 AAACAAAAGAAGAACTTGAG-ATTTCTATTCTTGAGACAAAATGGCAGAAGATTCGTACG 59
|||||||||| ||||||||| |||| ||| ||||||||||||||||||||||| ||||||
Sbjct 2 AAACAAAAGAGGAACTTGAGAATTT-TATGCTTGAGACAAAATGGCAGAAGATACGTACG 60
Query 60 AGGAAGAGTGCGACTACTTGTTCAAGGCGGTGTTGATCGGAGACTCAGCCGTCGGGAAAT 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 61 AGGAAGAGTGCGACTACTTGTTTAAGGCGGTGTTGATCGGAGACTCAGCCGTCGGAAAAT 120
Query 120 CAAACCTCTTGTCTAGATTTTCTAAAGACGAGTTCCGGTTTGACTCTAAACCAACCATCG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAACCTCTTGTCTAGATTTTCTAAAGACGAGTTCCGGTTTGACTCTAAACCAACCATCG 180
Query 180 GAGTTGAGTTTGCTTACCGGAATGTTCACGTCGGAGATAAAATCATCAAGGCTCAGATTT 239
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGTAGAGTTTGCTTACCGGAATGTTCACGTCGGAGATAAAATCATCAAGGCTCAGATTT 240
Query 240 GGGACACCGCCGGCCAAGAAAGATTTAGGGCAATTACAAGTTCGTACTACCGTGGAGCAT 299
|||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 241 GGGACACCGCCGGCCAAGAAAGATTTCGAGCAATCACAAGTTCGTACTACCGTGGAGCAT 300
Query 300 TAGGGGCATTACTGATTTACGACATCACAAGACGAACAACTTTCGACAACATCAAGAAAT 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 TAGGGGCATTACTGATTTACGACATCACTAGACGAACAACTTTCGACAACATCAAGAAAT 360
Query 360 GGCTTTTTGAGCTTAGGGACTTTGCCAATCCCGAAACCGTGGTTGTCCTCGTCGGCAACA 419
||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 361 GGCTTTTCGAGCTTAGAGACTTCGCCAATCCCGAAACCGTCGTTGTCCTCGTCGGAAACA 420
Query 420 AATCCGATCTGCGACAATCTAGAGAAGTCGAAGAAGACGAGGGTAAGACTCTAGCTGAAT 479
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 421 AATCTGATCTCCGACAATCTAGAGAAGTTGAAGAAGACGAGGGTAAGACTCTAGCAGAAT 480
Query 480 CAGAAGGTCTCTTCTTCCTCGAGACTTCGGCTTTAGAGAACGTTAACGTCGAAGAAGCAT 539
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 481 CAGAAGGTCTCTACTTCCTCGAGACTTCGGCTTTAGAGAATGTTAACGTCGAAGAAGCGT 540
Query 540 TTCTAGTGATGATCGGACGGATACACGAGGTTGTGACTCAGAGGATAGCTTCGGACAACA 599
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 541 TTCTAGTGATGATCGGACGGATACATGAGGTTGTTACTCAGAGGATAGCTTCGGAAAACA 600
Query 600 AATCCAACGGAGCTACGACGGCTCACATTAATGGTAATGGTAACGGTACGGTCCTTCCCG 659
|||||||||| ||| ||||| |||||||||| |||||||| ||||||||||||||||| |
Sbjct 601 AATCCAACGGTGCTGCGACGCCTCACATTAACGGTAATGGGAACGGTACGGTCCTTCCGG 660
Query 660 TTGGTAAAGAAATTGTGAATATACACGAAGTCACTGCTACTCAACCGTTA--A-GCTCTT 716
|||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 661 TTGGTAAAGAAATTGTGAATATACACGAAGTCACTGCTACTCAACCCTTATTAAGCTCAT 720
Query 717 CCTCCAACTGTTGTTTCAAGTAAATAACTAATGTATTTTTT-CGTCTATTGTTTTGGAAC 775
| ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 721 CTTCCAACTGTTGTTTCAAGTAAATAATTAATGTATTTTTTTCGTTTATTGTTTTGGAAT 780
Query 776 ACTTTGATGATGTTTTTATTTGCATGTTTATTCGTGAAAATTTTGACTTGGTTGAGTACA 835
||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||||||
Sbjct 781 ACTTTGATGATGTTTTTATTTGCCTGTGTATTCGTGAAAATTTTGCCTAGGTTGAGTACA 840
Query 836 TGAATTTTAATCATA 850
||||||| |||||||
Sbjct 841 TGAATTTAAATCATA 855
> AT1G18200.1 | Symbols: AtRABA6b, RABA6b | RAB GTPase homolog
A6B | chr1:6265416-6266937 REVERSE LENGTH=852
Length=852
Score = 553 bits (299), Expect = 1e-156
Identities = 591/727 (81%), Gaps = 39/727 (5%)
Strand=Plus/Plus
Query 28 TTCTTGAGACAAAATGGCAGAAGATTCGTACGAGGAAGAGTGCGACTACTTGTTCAAGGC 87
||| ||||| | ||||| || || |||||||| ||||||||||||||| | ||||||||
Sbjct 150 TTCCTGAGAGAGCATGGCGGAGGAATCGTACGACGAAGAGTGCGACTACCTATTCAAGGC 209
Query 88 GGTGTTGATCGGAGACTCAGCCGTCGGGAAATCAAACCT-CTTGTCTAGATTTTCTAAAG 146
|||| |||| |||||||| |||||||| ||||||||||| ||| || || || || | ||
Sbjct 210 GGTGCTGATAGGAGACTCCGCCGTCGGAAAATCAAACCTCCTT-TCGAGGTTCTCGAGAG 268
Query 147 ACGAGTTCCGGTTTGACTCTAAACCAACCATCGGAGTTGAGTTTGCTTACCGGAATGTTC 206
| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 269 ATGAGTTTCGGTTAGACTCTAAACCGACCATCGGAGTAGACTTTGCTTACCGGAATGTTC 328
Query 207 ACGTCGGAGATAA-AATCATCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAAAGATTT 265
||| || ||||| | | || ||||||||||| |||||||||||||||||||||||||||
Sbjct 329 GCGTGGGCGATAAGACT-ATAAAGGCTCAGATATGGGACACCGCCGGCCAAGAAAGATTT 387
Query 266 AGGGCAATTACAAGTTCGTACTACCGTGGAGCATTAGGG-GCATTACTGATTTACGACAT 324
|| ||||| || |||||||| ||||||||||| || ||| || ||||| || ||||||||
Sbjct 388 AGAGCAATAACGAGTTCGTATTACCGTGGAGCCTT-GGGAGCTTTACTAATCTACGACAT 446
Query 325 CACAAGACGAA-CAACTTTCGACAACATCAAGAAATGGCTTTTTG-AGCTTAG-GGACTT 381
||||||||||| || ||||| | ||||| |||||||| || | | |||| || || |||
Sbjct 447 CACAAGACGAATCA-CTTTCAAAAACATTGAGAAATGG-TTGTCGGAGCTCAGAGG-CTT 503
Query 382 -TGCCAATCCCGAAACCGTGGTTGTCCTCGTCGGCAACAAATCCGATCT-GCGACAATCT 439
| ||| |||||| || || ||||| |||||||| |||||||||||||| | | || |||
Sbjct 504 CT-CCAGTCCCGAGACTGTCGTTGTTCTCGTCGGTAACAAATCCGATCTCGGG-CAGTCT 561
Query 440 AGAGAAGTCGAAGAAGACGAGGGTAAGACTCTAGCTGAATCAGAAGGTCTCT-TCTTCCT 498
|||||||| |||||||| ||||||||||||||||| |||||||||||||||| | ||| |
Sbjct 562 AGAGAAGTTGAAGAAGAAGAGGGTAAGACTCTAGCAGAATCAGAAGGTCTCTATTTTC-T 620
Query 499 CGAGACTTCGGCTTTAGAGAACGTTAACGTCGAAGAAGCATTTCTA-GTGATGATCGGAC 557
||| || ||||||||||||||| ||||| |||||||| |||||| | ||||||||||
Sbjct 621 CGAAACATCGGCTTTAGAGAACCAAAACGTTGAAGAAGCGTTTCTAAGC-ATGATCGGAC 679
Query 558 GGATACACGAGGTTGTGACTCAGAGGATAGCTTCGGACAACAAA-TCCAACGGAGCTACG 616
||||||| |||||| ||||||||| || | || ||||| | | || ||||| | |
Sbjct 680 GGATACATGAGGTTTTGACTCAGAAAATCGTTTTAGACAATAGACTC-AACGG---T--G 733
Query 617 ACGGCTCACATTAATGGTAATGGTAACGGTACGGTCCTTCC-CGTTGGTAAAGAAATTGT 675
|||| | ||| | | || | ||||||| | ||| |||| | |||||||| |||||
Sbjct 734 ACGG-TAACA--AC-GA-AA-G-TAACGGTGCTGTCGTTCCGCCC-GGTAAAGAGATTGT 785
Query 676 GAATATACACGAAGTCACTGCTACTCAACCGTTAAG--CT-CTTCCTCCAACTGTTGTTT 732
|||||| || ||||| || || |||| |||||| || || ||| ||||| ||||| |
Sbjct 786 GAATATTCATGAAGTTACCGCCACTCGACCGTTGAGTACTTCTTTGTCCAATTGTTGCTA 845
Query 733 CAAGTAA 739
|||||||
Sbjct 846 CAAGTAA 852
> AT3G15060.1 | Symbols: AtRABA1g, RABA1g | RAB GTPase homolog
A1G | chr3:5069166-5070200 FORWARD LENGTH=902
Length=902
Score = 106 bits (57), Expect = 4e-22
Identities = 169/222 (76%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 82 CAAGGCGGTGTTGATCGGAGACTCAGCCGTCGGGAAATCAAACCT-CTTGTCTAGATTTT 140
||||| ||| || ||||| || || | |||||| ||||| || || ||| ||| ||||
Sbjct 115 CAAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTT-TCTCGATTCA 173
Query 141 C-TAAAGACGAGTTCCGGTTTGACTCTAAA-CCAACCATCGGAGTTGAGTTTGCTTACCG 198
| | |||||||| | | || |||||| || |||||||| || || || || |||
Sbjct 174 CGCGCA-ACGAGTTCAGCCTCGAGTCTAAATCC-ACCATCGGTGTCGAATTCGC-CACCC 230
Query 199 GAATG--TTCACGTCGGA-GATAAAATCATCAAGGCTCAGATTTGGGACACCGCCGGCCA 255
||| | |||| ||| || || |||||| |||||||||||||||||||||||||||||||
Sbjct 231 GAA-GCATTCATGTC-GATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGCCA 288
Query 256 AGAAAGATTTAGGGCAATTACAAGTTCGTACTACCGTGGAGC 297
||| |||| | ||||| ||||| | ||||| || |||||
Sbjct 289 AGAGAGATACCGAGCAATCACAAGCGCATACTATCGAGGAGC 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5