BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476509
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-depe... 2254 0.0
AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dep... 1101 0.0
> AT1G73690.1 | Symbols: CDKD1;1, AT;CDKD;1, CAK3AT | cyclin-dependent
kinase D1;1 | chr1:27714948-27717281 FORWARD LENGTH=1625
Length=1625
Score = 2254 bits (1220), Expect = 0.0
Identities = 1501/1629 (92%), Gaps = 49/1629 (3%)
Strand=Plus/Plus
Query 1 GTTTACTTTTCAATATTTTCTCCT-CAAATGTCGATTCTTTCTGTGATTGCTCTAACGGC 59
|||||||||||||||||||| ||| |||||||||||| |||||| ||||||||||||||
Sbjct 1 GTTTACTTTTCAATATTTTCCCCTAAAAATGTCGATTCCTTCTGTAATTGCTCTAACGGC 60
Query 60 TACTTTTTTCGCCAGAG---CATAAGAAACCTCAACGTTAACGATAAC--A--AATT--G 110
||| |||||| |||||| ||||||| |||||||||||||||||||| | |||| |
Sbjct 61 TAC-TTTTTCTCCAGAGCATCATAAGATACCTCAACGTTAACGATAACAAATTAATTAAG 119
Query 111 --C---TT-G-T-AA-T-C---TG----G-TTAGTGAATTCCGGAGATGGATCAGCCaaa 152
| || | | || | | || | |||| || ||||||||||||| ||||| ||
Sbjct 120 ATCAGTTTCGATCAATTGCTTGTGATCCGATTAGAGAGTTCCGGAGATGGAACAGCCGAA 179
Query 153 aaaaGTTGCCGATAGGTATCTGAAGCGTGAGGTTCTTGGTCAAGGTACTTACGGAGTCGT 212
|||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 180 GAAAGTTGCTGATAGGTATCTAAAGCGAGAGGTTCTTGGTCAAGGTACTTATGGAGTCGT 239
Query 213 CTTCAAGGCTACTGATACTAAGAATGGAGAAACTGTAGCGATTAAGAAAATAAGACTTGG 272
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 CTTCAAAGCTACTGATACAAAGAATGGAGAAACTGTAGCGATCAAGAAAATAAGACTTGG 299
Query 273 TAAAGAGAAAGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAATTACTTAAAGAGCT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAAGAGAAAGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAATTACTTAAAGAGCT 359
Query 333 TAAGCATCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAGGAGAACTTGCACAT 392
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 360 TAAGCATCCACATATAATTGAGTTGATTGATGCGTTTCCTCACAAGGAGAATTTGCACAT 419
Query 393 TGTGTTTGAGTTCATGGAGACTGATCTCGAGGCTGTTATTCGCGATCCTAATCTGTTTCT 452
||||||||||||||||||||||||||||| || ||||| || |||| |||||| | |||
Sbjct 420 CGTGTTTGAGTTCATGGAGACTGATCTCGAAGCAGTTATCCGAGATCGTAATCTCTATCT 479
Query 453 TTCGCCCGCTGATGTCAAATCTTACCTCCAAATGATATTGAAAGGTCTTGAGTATTGCCA 512
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TTCGCCTGGTGATGTCAAATCTTACCTCCAAATGATATTGAAAGGTCTTGAATATTGCCA 539
Query 513 TGACAAATGGGTTTTGCACAGAGATATGAAGCCAAACAACTTGTTGATAGGACCCAATGG 572
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGCAAATGGGTTCTGCACAGAGATATGAAGCCAAACAACTTGTTGATAGGACCCAATGG 599
Query 573 ACAACTGAAACTTGCAGATTTTGGGTTAGCTCGTATATTTGGTAGCCCAGGTCGTAAGTT 632
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 ACAGCTGAAACTTGCAGATTTTGGGTTAGCACGTATATTTGGTAGCCCAGGTCGTAAGTT 659
Query 633 TACCCACCAGGTCTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGCAAAACA 692
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TACCCACCAGGTGTTTGCTAGATGGTATAGAGCACCTGAACTTTTGTTTGGTGCAAAACA 719
Query 693 ATATGGTGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACG 752
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATATGATGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTTGCTGAACTTCTATTACG 779
Query 753 CAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGCAAAATCTTTGCTGCCTT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGCAAAATCTTTGCTGCCTT 839
Query 813 TGGGACCCCAAAAGCAGATCAGTGGCCCGATATGATCTGCCTTCCTGATTATGTAGAGTA 872
|||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 840 TGGGACTCCAAAAGCAGATCAGTGGCCTGACATGATCTGCCTTCCTGATTATGTAGAGTA 899
Query 873 TCAATTTGTCCCTGCGCCTTCTTTACGTTCTTTACTCCCAACGGTTAGTGAGGATGCATT 932
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 900 TCAATTTGTCCCTGCTCCTTCTTTACGTTCTTTACTCCCAACGGTTAGTGAGGATGCTTT 959
Query 933 AGATTTGTTGTCAAAGATGTTTACCTATGATCCCAAGTCTAGAATAACGATTCAGCAGGC 992
||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 960 AGATTTGTTGTCAAAGATGTTCACCTATGACCCCAAGTCTAGAATATCGATTCAGCAGGC 1019
Query 993 TCTACAACACAGGTACTTCACATCTGCACCTTCGCCTACTGACCCTTTAAAGCTCCCAAG 1052
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 TCTAAAACACAGGTACTTCACATCTGCACCTTCACCTACTGACCCTTTAAAGCTCCCAAG 1079
Query 1053 ACCAGTT-CGCAAGCAGGACGCTAAGTCATCTGACAGTAAACACGAAGCTATTAAAGTGT 1111
||||||| | |||||| || |||||||||||||| ||||||| ||||| |||||||||
Sbjct 1080 ACCAGTTTC-CAAGCAAGATGCTAAGTCATCTGATAGTAAACTTGAAGCCATTAAAGTGC 1138
Query 1112 TGTCACCAGCACATAAGCTTAGAAGAGTGATGCCTGACCGAGGAAAGTCTGCTAATGGTT 1171
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1139 TGTCACCAGCACATAAGTTTAGAAGAGTGATGCCTGACCGAGGAAAGTCTGGTAATGGTT 1198
Query 1172 TCAAGGACCAGAGTGTTGATGTCATGAGACAAGCTAGCCATGATGGACAAGCACCGATGT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 TCAAGGACCAGAGTGTTGATGTCATGAGACAAGCTAGCCATGATGGACAAGCACCAATGT 1258
Query 1232 CTTTAGATTTCACCATCCTAGCCGAGCGGCCTCCTAACCGACCAACCATCACCAGTGCGG 1291
||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||| |
Sbjct 1259 CTTTAGATTTCACCATCTTAGCTGAGCGGCCACCAAACCGACCAACCATCACCAGTGCAG 1318
Query 1292 ATAGATCTCATCTGAAGAGGAAACTCGATCTCGAGTTCCTATAGGATATAGCTTAACAGG 1351
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 1319 ATAGATCTCATCTGAAGAGGAAACTTGATCTCGAGTTCCTATAGGATATCGCGTAACAGG 1378
Query 1352 CTTCTTCTTGACGTCGTTCTTCAG-TTCCTATAGCCTATAGGATCTCTCTTACTGGTTGG 1410
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1379 CTTCTTCTTGACGTCGTTCTTCAGGTTCCTATAGCCTATAGGATCTCTCTTACTGGTTGG 1438
Query 1411 TTCC-TG-A--AATT--TG---T----CATATTACAACTAGTGATGACGAATAGTGTGAA 1457
|||| | | |||| || | ||||| |||||||||||||||||||||| ||||
Sbjct 1439 TTCCGTTCAGTAATTCCTGAAATTTTTCATATCACAACTAGTGATGACGAATAGTTTGAA 1498
Query 1458 TCATTCTTTCTGTTTTCAATAAA-A-TATAAAGTACAGATGATTAACTAATCATCATGTA 1515
||||||||||||| | |||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 1499 TCATTCTTTCTGTCTAAAATAAAGAATATAAAGCACAGATGATTAACTAATCATCATGTA 1558
Query 1516 CACCCATCATAGAACAATCTATCTGTTTTTGGCCTATGCTCAAAAGAGAGTTCTGATCCC 1575
||||| |||||||| ||||| |||||||||||||||| | | ||||||| |||||||||
Sbjct 1559 CACCCTTCATAGAAAAATCT--CTGTTTTTGGCCTATGTTTAGAAGAGAGCTCTGATCCC 1616
Query 1576 AAACTCATT 1584
|||||||||
Sbjct 1617 AAACTCATT 1625
> AT1G18040.1 | Symbols: CDKD1;3, AT;CDCKD;3, CAK2AT | cyclin-dependent
kinase D1;3 | chr1:6206871-6209500 REVERSE LENGTH=1634
Length=1634
Score = 1101 bits (596), Expect = 0.0
Identities = 1010/1204 (84%), Gaps = 52/1204 (4%)
Strand=Plus/Plus
Query 141 GGATCAGCCaaaaaaaGTTGCCGATAGGTATCTGAAGCGTGAGGTTCTTGGTCAAGGTAC 200
||| |||||||| |||||||| ||||||||||| |||| ||||||||||| ||||||||
Sbjct 207 GGAGCAGCCAAAGAAAGTTGCTGATAGGTATCTCAAGCAAGAGGTTCTTGGGCAAGGTAC 266
Query 201 TTACGGAGTCGTCTTCAAGGCTACTGATACTAAGAATGG-AGAAACTGTAGCGATTAAGA 259
|| |||||||||||||| || |||||||||||| | || | |||||||||| |||||||
Sbjct 267 CTATGGAGTCGTCTTCAAAGCCACTGATACTAAG-ACGGAACAAACTGTAGCAATTAAGA 325
Query 260 AAATAAGACTTGGTAAAGAGAA-AGAAGGTGTGAATGTAACAGCTCTTAGAGAAATCAAA 318
| ||||| ||||||||| | || ||||||||| ||| | |||||||| ||||||||||||
Sbjct 326 AGATAAGGCTTGGTAAACA-AAGAGAAGGTGTAAATATTACAGCTCTCAGAGAAATCAAA 384
Query 319 TTACTTAAAGAGCTTAAGCATCCACATATAATTGAGTTGATTGATGCATTCCCTCACAAG 378
| || |||||||| |||||||| ||||| ||| | | ||||||||||| |||||||||
Sbjct 385 ATGCTCAAAGAGCTAAAGCATCCTCATATTATTCTGCTCATTGATGCATTTCCTCACAAG 444
Query 379 GAGAACTTGCA-CATTGTGTTTGAGTTCATGGAGACTGATCTCGAGGCTGTTATTCGCGA 437
|| |||||||| | |||| |||||||||||||||||||| ||||| || |||||||||||
Sbjct 445 GAAAACTTGCATC-TTGTCTTTGAGTTCATGGAGACTGACCTCGAAGCAGTTATTCGCGA 503
Query 438 TCCTAATC-TGTTT-CTTTCGCCCGCTGATGTCAAATCTTACCTCCAAATGATATTGAAA 495
| |||| | | ||| || || ||||| || | ||||| ||||||| ||||| ||| |||
Sbjct 504 TTCTAA-CAT-TTTCCTCTCACCCGCCGACATTAAATCCTACCTCCTAATGACATTTAAA 561
Query 496 GGTCTTGAGTATTGCCATGACAAATGGGTTTTGCACAGAGATATGAAGCCAAACAACTTG 555
|| |||| |||||||| || ||||||||||||||||| |||||||||||||| ||||||
Sbjct 562 GGACTTGCTTATTGCCACGATAAATGGGTTTTGCACAGGGATATGAAGCCAAATAACTTG 621
Query 556 TTGATAGGACCCAATGGACAACTGAAACTTGCAGATTTTGGGTTAGCTCGTATATTTGGT 615
|| |||||| ||||||| || || |||||||||||||| ||||| ||||||||||||
Sbjct 622 TTAATAGGAGTTGATGGACAGCTTAAGCTTGCAGATTTTGGCTTAGCACGTATATTTGGT 681
Query 616 AGCCCAGGTCGTAAGTTTACCCACCAGGTCTTTGCTAGATGGTATAGAGCACCTGAACTT 675
|| ||| ||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 682 AGTCCAAATCGTAAGTTTACCCACCAGGTGTTTGCTAGATGGTACAGAGCACCAGAACTT 741
Query 676 TTGTTTGGTGCAAAACAATATGGTGGTGCAGTTGATGTTTGGGCTGCTGGCTGCATTTTT 735
||||||||||||||||||||||||| |||||||||||||||||| | || |||||| ||
Sbjct 742 TTGTTTGGTGCAAAACAATATGGTGCTGCAGTTGATGTTTGGGCCGTTGCCTGCATATTC 801
Query 736 GCTGAACTTCTATTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGC 795
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GCCGAACTTCTACTACGCAGACCATTTCTTCAGGGAAACAGTGATATTGATCAATTAAGC 861
Query 796 AAAATCTTTGCTGCCTTTGGGACCCCAAAAGCAGATCAGTGGCCCGATATGATCT--GCC 853
||||| |||||||| |||||||| |||||||||||||||||||| ||| | | | ||
Sbjct 862 AAAATATTTGCTGCTTTTGGGACACCAAAAGCAGATCAGTGGCCGGATTTAA-CAAAGC- 919
Query 854 TTCCTGATTATGTAGAGTATCAATTTGTCCCTGCGCCTTCTTTACGTTCTTTACTCCCAA 913
|||| ||||||||||||||||||||||||||||| || ||| ||||||||||| |||||
Sbjct 920 TTCCAGATTATGTAGAGTATCAATTTGTCCCTGCACCGTCTCTACGTTCTTTATTCCCAG 979
Query 914 CGGTTAGTGAGGATGCAT-TAGATTTGTTGTC-AAAGATGTTTACCTATGATCCCAA-GT 970
| |||||||| ||||| | | || |||||||| ||| |||||||||||||| ||||| |
Sbjct 980 CAGTTAGTGATGATGC-TCTCGACTTGTTGTCCAAA-ATGTTTACCTATGA-CCCAAAGG 1036
Query 971 CTAGAATAACGATTCAGCAGGCTCTACAACACAGGTACTTCACATCTGCACCTTCGCCTA 1030
||||||| | ||| ||||||||||| |||||||||||||||| ||||||||| | ||||
Sbjct 1037 CTAGAATTTCCATTAAGCAGGCTCTAGAACACAGGTACTTCACTTCTGCACCTGCTCCTA 1096
Query 1031 CTGACCCTT-TAAAGCTCCCAA-GACCAGTTCGC-AAGCAGGACGCTAAGTCATCTGACA 1087
||||||| ||| |||||||| | || |||| | |||||||| | ||| |||||| ||
Sbjct 1097 CTGACCCGGCTAA-GCTCCCAAAGCCC-GTTC-CTAAGCAGGATGGTAAATCATCTTACG 1153
Query 1088 GTAAACACGAAGCTATTAAAGTGTTGTCACCAGCACATAAGCTTAGAAGAGTGATGCCTG 1147
||||||| || || |||| |||| |||||| ||| |||||||||||||||||||||||
Sbjct 1154 GTAAACATGAGGCCATTACAGTGCAATCACCACCACGTAAGCTTAGAAGAGTGATGCCTG 1213
Query 1148 ACCGAGGAAAG-TCTGCTAATGGTTTCAAGGACCAGAGTGTTGATGTCATGAGACAAGCT 1206
| || || | | | || || | ||| | | || | | |||| ||| ||||
Sbjct 1214 AGCGTGGGAGGGT-TGATA--G-TTT---G-A--AG--TCTC-ATGT--TGA--CAAG-- 1254
Query 1207 AGCCATGATGGACAAGCACCGATGTCTTTAGATTTCACCATCCTAGCCGAGCGGCCTCCT 1266
| || | ||||||||| ||||| |||||||| |||||||| || ||||| |||||
Sbjct 1255 -G--ATCA---ACAAGCACCCATGTCATTAGATTTTACCATCCTCGCTGAGCGACCTCCA 1308
Query 1267 AACCGACCAACCATCACCAGTGCGGATAGATCTCATCTGAAGAGGAAACTCGATCTCGAG 1326
||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1309 AACAGGCCAACAATCACCAGTGCTGATAGATCTCATCTGAAGAGGAAACTCGATCTTGAG 1368
Query 1327 TTCC 1330
||||
Sbjct 1369 TTCC 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5