BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476512
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73720.1 | Symbols: SMU1 | transducin family protein / WD-40... 2868 0.0
> AT1G73720.1 | Symbols: SMU1 | transducin family protein / WD-40
repeat family protein | chr1:27725002-27729931 FORWARD LENGTH=1802
Length=1802
Score = 2868 bits (1553), Expect = 0.0
Identities = 1709/1783 (96%), Gaps = 16/1783 (1%)
Strand=Plus/Plus
Query 1 CGTCTCCGGCGAAAATCCACTACGACTGACTATGGCGCTCGAAATCGAAGCTCGAGATGT 60
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 27 CGTCTCCGGCGAAAACCCACTACGACTGAGTATGGCGCTCGAAATCGAAGCTCGAGATGT 86
Query 61 TATAAAGATTATGCTTCAGTTCTGCAAAGAAAACTCCTTGAATCAGACATTCCAGACATT 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 87 AATAAAGATTATGCTTCAGTTCTGCAAAGAAAATTCCTTGAATCAGACATTCCAGACATT 146
Query 121 ACAAAGTGAATGTCAGGTTTCTTTAAATACAGTAGACAGCGTCGAGACGTTTATTTCTGA 180
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 147 ACAAAGCGAGTGTCAGGTTTCCTTGAATACAGTAGACAGCGTCGAGACGTTTATTTCTGA 206
Query 181 TATTAATAGCGGAAGATGGGACTCGGTACTACCTCAAGTTTCTCAGCTTAAACTTCCCAG 240
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 207 TATTAATAGTGGAAGATGGGACTCGGTACTACCTCAAGTTTCCCAGCTTAAACTTCCCAG 266
Query 241 GAATAAACTAGAAGACCTTTATGAACAGATTGTATTGGAGATGATAGAACTTCGAGAGTT 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 GAATAAACTTGAAGACCTTTATGAACAGATTGTATTGGAGATGATAGAACTTCGAGAGTT 326
Query 301 GGACACTGCTCGAGCTATTTTGAGACAGACTCAGGTGATGGGTGTCATGAAGCAGGAGCA 360
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 327 GGACACTGCCCGAGCTATTTTGAGACAAACTCAGGTGATGGGTGTCATGAAGCAGGAGCA 386
Query 361 ACCAGAAAGATATTTGCGGATGGAGCATCTTCTAGTCAGAAGCTATTTTGATCCGCATGA 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGCAGAAAGATATTTGCGGATGGAGCATCTTCTAGTCAGAAGCTATTTTGATCCGCATGA 446
Query 421 GGCTTATGGAGACTCAACTAAAGAAAGAAAACGGGCACAGATTGCTCAAGCTGTGGCTGC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 GGCTTATGGAGACTCAACTAAAGAAAGAAAACGGGCACAGATTGCTCAAGCTGTGGCTGC 506
Query 481 CGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 CGAGGTTACCGTGGTACCACCTTCACGGTTAATGGCTTTGATAGGTCAGGCTTTAAAGTG 566
Query 541 GCAACAACATCAAGGTCTGCTCCCTCCAGGAACTCAGTTTGACCTCTTTCGTGGGACGGC 600
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 567 GCAACAACATCAAGGCCTGCTCCCTCCAGGAACACAGTTTGACCTCTTTCGTGGGACGGC 626
Query 601 AGCTATGAAACAAGATGTAGAAGACACACATCCTAATGCTCTTACACATACCATAAAGTT 660
||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 627 AGCTATGAAGCAAGATGTAGAAGACACACATCCTAATGTTCTTACTCATACCATAAAGTT 686
Query 661 TGGTAAAAAGAGTCATGCCGAATGCGCTAGATTCTCACCAGATGGACAGTTTCTTGCCTC 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 687 TGGTAAAAAGAGTCATGCAGAATGCGCTAGATTCTCACCAGATGGACAGTTTCTTGCATC 746
Query 721 TTCTTCTGTTGATGGTTTTATCGAGGTATGGGATTACATAAGTGGGAAGCTGAAGAAGGA 780
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 747 TTCTTCTGTGGATGGTTTTATCGAGGTATGGGATTACATAAGTGGAAAGCTCAAGAAGGA 806
Query 781 TTTGCAATATCAAGCTGATGAAACTTTCATGATGCATGATGATCCTGTCCTTTGCATAGA 840
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 807 TTTGCAATATCAAGCTGATGAATCTTTCATGATGCATGATGATCCTGTCCTCTGCATAGA 866
Query 841 TTTTAGCAGAGATTCAGAGTTGCTTGCATCTGGGTCACAAGATGGAAAGATTAAAATCTG 900
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 867 CTTTAGCAGAGATTCAGAGATGCTTGCATCTGGGTCACAAGATGGAAAGATTAAAATCTG 926
Query 901 GCGTATAAGGACTGGTCTATGTATACGTCGTTTTGAGCATGCACATTCCCAAGGAGTTAC 960
|||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 927 GCGTATAAGGACTGGTGTATGCATACGTCGTTTTGA---TGCACATTCCCAAGGAGTTAC 983
Query 961 AAGTCTTTCCTTCTCTCGGGATGGAAGCCAATTACTGAGTACCTCCTTTGACCAAACTGC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 AAGTCTTTCCTTCTCTCGGGATGGAAGCCAATTACTGAGTACCTCCTTTGACCAAACTGC 1043
Query 1021 AAGAATTCATGGTTTGAAATCTGGGAAATTGTTGAAAGAATTTCGTGGTCACACATCTTA 1080
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 AAGAATCCATGGTTTGAAATCTGGGAAATTGTTGAAAGAATTTCGTGGTCACACATCTTA 1103
Query 1081 TGTAAATAATGCCATCTTTACAAGTGATGGAAGCCGTATAATCACTGCCTCCAGTGATTG 1140
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1104 TGTAAATCATGCCATCTTTACAAGTGATGGAAGCCGTATTATCACTGCCTCCAGTGATTG 1163
Query 1141 TACAGTAAAGGTCTGGGATTCTAAGACGACAGATTGTCTACAAACATTCAAGCCGCCACC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TACAGTAAAGGTCTGGGATTCTAAGACGACAGATTGTCTACAAACATTCAAGCCGCCACC 1223
Query 1201 TCCGTTAAGGCAAAGTGACGCATCAGTCAACTCTATTCATTTGTTCCCCAAAAACACAGA 1260
|||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1224 TCCGTTAAGGGGAACTGATGCATCAGTCAACTCTATTCACTTGTTCCCCAAAAACACAGA 1283
Query 1261 ACACATTGTTGTGTGCAACAAGACATCATCTATATACATCATGACACTCCAAGGACAGGT 1320
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1284 ACACATTGTTGTGTGCAACAAGACATCATCTATATACATTATGACACTCCAAGGACAGGT 1343
Query 1321 TGTGAAGAGTTTCTCATCGGGTAATAGGGAAGGAGGAGATTTTGTAGCAGCATGTGTATC 1380
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 TGTGAAGAGTTTCTCATCCGGTAATAGGGAAGGAGGAGATTTTGTAGCAGCATGTGTATC 1403
Query 1381 TACAAAAGGAGATTGGATATACTGCATCGGCGAAGACAAGAAATTGTACTGCTTCAACTA 1440
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1404 TACAAAAGGAGATTGGATATACTGCATCGGCGAAGACAAGAAACTGTACTGCTTCAACTA 1463
Query 1441 TCAAACCGGTGGACTTGAGCATTTCATGATGGTGCATGAGAAGGATGTGATTGGTATAAC 1500
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 TCAATCTGGTGGACTTGAGCATTTCATGATGGTGCATGAGAAGGATGTGATTGGTATAAC 1523
Query 1501 ACACCACCCGCATAGAAACCTCCTTGCTACCTATAGTGAAGATTGCACCATGAAGTTATG 1560
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1524 ACACCACCCGCATAGAAACCTCCTTGCTACCTATAGTGAAGATTGCACTATGAAGTTATG 1583
Query 1561 GAAGCCCTGAGTTTCTCTCATCTTCAAGTCTTGCTTTT-TGTATGATTAGTCTGTCTTTA 1619
|||||||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||
Sbjct 1584 GAAGCCCTGAGTTT-TCTCATCATCAAGTCTTG-TTTTCTGTATGATTAGTCTGTCTTTA 1641
Query 1620 TTTGATTTGCACGCTTTGCTCGGGTTAGAACTAGTGTTAAGTTATGTGAAACCATCTTTG 1679
|||||||||||| ||| ||||||||||||||||||| || | |||||||||||||||
Sbjct 1642 TTTGATTTGCACTCTT--CTCGGGTTAGAACTAGTGT-AA-T---GTGAAACCATCTTTG 1694
Query 1680 CAA-GAACTTTGGCCTTTTTGGGAACACTACCTACAGACTTTGAA-CCAGTATTTCAGAT 1737
||| || || | || |||||||||||||||| ||||||| | || |||| |||||||||
Sbjct 1695 CAAAGATCTCAG-CCATTTTGGGAACACTACCCACAGACTCTAAAACCAGCATTTCAGAT 1753
Query 1738 TTTAAGACTGTTTCACCCGGCCTTGTGCCTTCTAGTAGTTTAT 1780
|||||||| |||||||| ||||||| ||||| |||||||||||
Sbjct 1754 TTTAAGACCGTTTCACCTGGCCTTGAGCCTTGTAGTAGTTTAT 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88051755930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5