BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476515
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73750.1 | Symbols: | Uncharacterised conserved protein UCP... 2412 0.0
> AT1G73750.1 | Symbols: | Uncharacterised conserved protein UCP031088,
alpha/beta hydrolase | chr1:27736630-27739079 FORWARD
LENGTH=1580
Length=1580
Score = 2412 bits (1306), Expect = 0.0
Identities = 1495/1587 (94%), Gaps = 9/1587 (1%)
Strand=Plus/Plus
Query 1 CGGGATATTGGTAGTGATTCACGGTGGTTATGGACACTCTCCGATTCGAGTTAAGCTCGG 60
||||||| | |||||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 1 CGGGATACCGCTAGTGATTAACGGTGGTTATGGATACCCTCCGATTCGAGTTAAGCTCAG 60
Query 61 CCTCCTTCACTTCCGCTGTCGCCGCCTCTTCTTTACACAATCACTCACGGCATTTCTTCT 120
| |||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 61 CTTCCTTCACTTCCGCCGTCACCGCCTCTTCTTTACACAGTCACTCACGGTATTTCTTCT 120
Query 121 CCTCACTGCAACTCGGCCGAGTCGGCTCATCATCTCCGGCGATCACATCGGTCGCGAGGA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CCTCAGTGCAACTCGGCCGAGTCGGCTCATCATCTCCGGCGATCACATCGGTCTCGAGGA 180
Query 181 CGACGGAGAATGAAATCTGCACGGCGGACGAACTTCACTACGTTCCTGTTCCAAATTCCG 240
|||| | ||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 181 CGACAGTGAATGAAATCTGCACGGCGGATGAACTTCACTACGTTCCTGTTCCCAACTCCG 240
Query 241 ATTGGCGCGTCGCTCTCTGGCGATATCTTCCTTCCCCAAAGGCACCAAAGAGGAACCATC 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 ATTGGCGCGTCGCTCTCTGGCGATATCTTCCTTCCCCAAAGGCACCGAAGAGGAACCATC 300
Query 301 CTTTGCTTCTACTGTCTGGAATTGGGACCAATGCTGTTACATACGATCTTTCCCCTGAGT 360
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTGCTTCTATTGTCTGGGATTGGGACCAATGCTGTTACATACGATCTTTCCCCTGAGT 360
Query 361 GTTCTTTTGCAAGATTCATGTCTGGATCAGGATTTGATACGTGGATTCTTGAGCTTCGTG 420
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 361 GTTCCTTTGCAAGATCCATGTCTGGATCAGGATTTGATACATGGATTCTTGAGCTCCGTG 420
Query 421 GAGCCGGGTTGAGTTCTTTAAGTGTCGATACAAATCTTGGTAAAGGCAATAGCCAGCAGC 480
|||||||| |||||||| | ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 421 GAGCCGGGCTGAGTTCTCTCAGTGTTGATACAAATCTTGGTAAAGGCAATAACCAGCAGC 480
Query 481 GGGTAGTCTCGAATCTATTGGAGAATTTCATAAGTGTATCTGAAAGGCTGGAAAATGTTC 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGATAGTCTCGAATCTATTGGAGAATTTCATAAGTGTATCTGAAAGGCTGGAAAATGTTC 540
Query 541 TTGATGGAGGTTCCAAGATCCTAGGGATGCAAGACCGTCTATCGAAGAGAGCAGGAGATT 600
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 541 TTGATGGAGGTTCCAAGATCCTTGGGATGCAAGACCGTCTATCGAAGAGAGCGGGAGATT 600
Query 601 TCAAGCAGCGGCTTGAACTTATCCCTCATTACAATTGGGATTTTGATAACTATCTAGAAG 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAAGCAGCGGTTTGAACTTATCCCTCATTACAATTGGGATTTTGATAACTATCTAGAAG 660
Query 661 AAGATGTTCCTTCTGCGATGGACTATGTAAGGACTCAAACCAAGTCAAAAGATGGAAAGT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGATGTTCCTTCTGCGATGGACTATGTAAGGACTCAAACCAAGTCAAAAGATGGAAAGT 720
Query 721 TGCTCGCAGTTGGTCACTCAATGGGTGGCATCTTGTTATATGCCTTGCTCTCAAGATGTG 780
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 TGCTAGCAGTTGGTCACTCAATGGGTGGTATCTTGTTATATGCCTTGCTCTCAAGATGTG 780
Query 781 GCTTTAAAGGAATGGATTCAGGTTTGGCTGCTGTCACCACTCTTGCATCAACATTTGACT 840
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 781 GCTTTAAAGGAATGGATTCAGGTTTGGCTGGTGTCACCACTCTCGCATCAACATTTGACT 840
Query 841 ATTCATCCTCAGGAACACTCCTCAAGTACCTATTACCCATGAAAGAGCCAGCACAAGCTA 900
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 841 ATTCATCCTCAGGAACACTCCTCAAGTACCTATTACCAATGAAAGAGCCTGCACAAGCTA 900
Query 901 TTAACCTGCCTATCATGCCGATTGACACAATGCTCGCTATGGTTCACCCTCTCATGTGTC 960
||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |||||||
Sbjct 901 TTAACCTTCCTATCATGCCAATTGACACAATGCTCGCTATGGCTCACCCTCTAATGTGTC 960
Query 961 GTCCTCCATATGCTTTGTCTTGGTTAACTGCTAATATCTCTGCCCCTCAAATGATGGACC 1020
||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 961 GTCCTCCATATTCTTTGTCCTGGTTAACCGCTAATATCTCTGCTCCTCAAATGATGGACC 1020
Query 1021 CTGAAGTGATTGAGAAGCTTGTTTTGAACAGCTTAAGCACAGTACCAGTTAAGCTTCTCT 1080
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1021 CTGAAGTTATTGAGAAGCTTGTTTTGAACAGCTTATGCACAGTACCAGTCAAGCTTCTCT 1080
Query 1081 TGCAGCTAACAACAGCCGTGGACCACGGTGGGCTGCGTGATAGAACGGGTACTTTCTGTT 1140
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1081 TGCAGCTAACAACAGCCGTGGACCACGGTGGGTTGCGTGACAGAACCGGTACTTTCTGTT 1140
Query 1141 ACAAGGATCATATCAGCAAAACCAATGTGCCTATCTTAGCTCTTGCAGGGGACTGGGACA 1200
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACAAGGATCATATCAGCAAAACAAATGTGCCTATCTTAGCTCTTGCAGGGGACTGGGACA 1200
Query 1201 TAATCTGCCCTCCCGATGCAGTATACGATACTGTAAAGCTGATTCCAGAACAACTAGCTA 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1201 TAATCTGCCCTCCCGATGCAGTATACGATACTGTAAAGCTGATTCCAGAACATCTAGCCA 1260
Query 1261 CTTTCAGAGTTTTAGGGTCACCCGGAGGTCCACATTATGGCCACCAGGATCTAATCTCTG 1320
||| || |||| |||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1261 CTTACAAAGTTGTAGGATCACCCGGAGGTCCACATTATGGCCACCAGGATCTAATTTCGG 1320
Query 1321 GTCGATCGGCTCCGAACGAAGTATATCCTCTGATTACTCGATTTCTTCAACTACATGATG 1380
||||| |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 1321 GTCGAACGGCTCGGAACGAAGTATATCCTCTGATTACTAGATTTCTTCAACAACAAGATG 1380
Query 1381 AGATTTAAGATCAACGAGAGTTCAAATGGATTTTGGTTCTTGTTTCTGTACATAAAACAT 1440
||| ||||||||||| ||| | |||||| |||||| |||||||||||||||||| |||||
Sbjct 1381 AGAGTTAAGATCAACAAGAATGCAAATGAATTTTGATTCTTGTTTCTGTACATATAACAT 1440
Query 1441 TCCATACATAC-TCTTATAAGTATACAAATCTTCACACAGTTAAACTCACAAGCACTGTA 1499
|||||| |||| | |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 1441 TCCATATATACAT-TTAT--GTGTACAAATCTTCATACAGTTAAACTCACAAGCACTGTA 1497
Query 1500 GTAGAAATTAAACT-CAAATGATACCTTTCAAATTGATCTCGTGTATGTGTAGATTACAC 1558
|| |||||||| | |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1498 -TACAAATTAAA-TACAAATGATACCTTT-AA-TTGATCTCGTGTATGTGTAGATTACAC 1553
Query 1559 TACAGATTCACGATGTTACTTGCACGT 1585
|| |||| ||||||||||||||||||
Sbjct 1554 TAAAGATAAACGATGTTACTTGCACGT 1580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5