BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476516
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73760.1 | Symbols: | RING/U-box superfamily protein | chr1... 1964 0.0
> AT1G73760.1 | Symbols: | RING/U-box superfamily protein | chr1:27739168-27741207
REVERSE LENGTH=1348
Length=1348
Score = 1964 bits (1063), Expect = 0.0
Identities = 1254/1343 (93%), Gaps = 26/1343 (2%)
Strand=Plus/Plus
Query 1 TTTTTTCTCTCTCTCACAGAGAAGAAGAAGACAATGCCAGTTTCTGCAGAGCCTTCTTCA 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 14 TTTTTTCTCTCTCTCACAGAGAAAAAGAACACAATGCCAGTTTCTGCAGAGCCTTCTTCA 73
Query 61 TCTTCTTCAACAACAATCGGTCAACACATCAGACTCCAACGACCTAGGAATCATCGAAAT 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 74 TCTTCTTCAACAACAATCGGTCAACACATGAGACTCCAACGACCTAGGAATCATCGAAAT 133
Query 121 CTCCCACCCATTTCCACCGCCGACGAACCTCTACTCCCCAAACCTAGCCGCGTCTCTAAA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 134 CTCCCACCCATTTCCACCGCCGACGAACCTCTAATCCCCAAACCTAGCCGCGTCTCTAAA 193
Query 181 TCCGCCATGTCTTCCTTCTTCCTCTTGCCAGAAACCACAAAGAAGAAACCC--C-AAACG 237
||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||
Sbjct 194 TCCGCCATGTCTTCCTTCTTCCTCTTGCCAGAAACTACTAAGAAGAAACCCAACGGAACG 253
Query 238 GCGTCGTTTCGTGGCT-TGGGCTGCACAACCTCCGCATCTCAGCAAGTTTCAGTCCCGGC 296
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GCGTCGTTTCGTGG-TCTAGGCTGCACAACCTCCGCATCTCAGCAAGTTTCAGTCCCGGC 312
Query 297 GGTGATTCGCTTCTCCGCGGATTGGGATGCGAGCAATTTCAAAATCAAGAAGACGAAGAA 356
|||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 313 AGTGATTCGCTCCTCCGCGGATTGGGATGCTAGTAATTTCAAAATTAAGAAGACGAAGAA 372
Query 357 GAAGAACAAGAACAAAGGTAGTAGCAGCTACAATGGTGGCTCGATTAAGATCTTGAGCGA 416
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 373 GAAGAACAAGAACAAGGGTAGTAGTAGCTACAATGGTGGTTCGATTAAGATCTTGAGCGA 432
Query 417 AGCTAG---TAGTAGTAGCGTCGCTTGCGCAGCGATTCCTGATGTTTGGTGTGGACCTGG 473
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 433 AGCTAGTACTAGTAGTAGCGTCGCTTGCGCAGCGATTCCTGATGTTTGGTGTGGTCCTGG 492
Query 474 TGTTGGGTTCTCAACGGATGCTGTCGTC---GG---C---GACACCGTCGAGTCAGATCC 524
|||||||| |||||||||||||||||| || | ||||| || | ||||||||
Sbjct 493 AGTTGGGTTTTCAACGGATGCTGTCGTCGGAGGCTCCATTGACACAGTTGTTTCAGATCC 552
Query 525 TCCGAGAAGGAATATTCCGGTGAGACGCAAAATCGATGGAGAAAAAACCAATAGTAGCAG 584
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 553 TCCGAGAAGGAATATTCCGGTGAGACGCAAAATCGATGGAGATAAAACCAATAGTAACAG 612
Query 585 TAATAATCAGAGAGAGTTTTGTTCTTCTCTTCTTCCCAGACGATCTCTCAATCAAGAATC 644
||||||||| |||||| || ||||||||||||||| |||||||||||||||||||| ||
Sbjct 613 TAATAATCATAGAGAGGGTTCTTCTTCTCTTCTTCCTAGACGATCTCTCAATCAAGAGTC 672
Query 645 TAATCCTTACTTTGATTCTGATTCG-GCTTTTTTGACATCGCGGTCTGAACAGACTGATA 703
||||||||| ||||||||||||||| | |||||||||||||||| |||| ||||||||||
Sbjct 673 TAATCCTTATTTTGATTCTGATTCGAG-TTTTTTGACATCGCGGGCTGAGCAGACTGATA 731
Query 704 GATATCATCGTCATCTAAGACAGTCTTACCCTGATGGACTCGCTGAGATGATGATGATGC 763
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 732 GATATCATCGTCATCTAAGACTGCCTTACCCTGATGGACTCGCTGAGATGATGATGATGC 791
Query 764 AGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTCGATCAATTCCATGACATGAGGC 823
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 792 AGAATGGTTTTGTGATGGGAGGAGTATTAAGCTCATTCGATCAATTCCGTGACATGAGGC 851
Query 824 TCAATGTTGATAACATGACATACGAGCAACTTTTGGAGCTTGGTGAAAGAATTGGTCATG 883
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 852 TCAATGTCGATAACATGACATACGAGCAACTTTTGGAGCTTGGTGAAAGAATTGGGCATG 911
Query 884 TGAACACTGGACTAAATGAAAAACAGATCAAAAGCTGTCTCCGGAAAGTTAAACCATTCC 943
||||||||||||| | |||||||||||||||||| ||||| |||||||| ||||||| ||
Sbjct 912 TGAACACTGGACTTACTGAAAAACAGATCAAAAGTTGTCTTCGGAAAGTCAAACCATGCC 971
Query 944 ATTTAGATACACCAGTTGCAGATAGAAAGTGCATCATCTGTCAAGACGAGTATGAGGCAA 1003
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 972 GGCAAGATACAACAGTTGCTGATAGAAAGTGCATCATCTGTCAAGACGAGTATGAGGCGA 1031
Query 1004 AGGACGAGGTAGGGAAATTACCG-TGTGGGCACAGGTTCCATATCCACTGTGTGAAACAA 1062
|||||||||||||| |||||| | ||||||||||||||||||||| |||||||||| |||
Sbjct 1032 AGGACGAGGTAGGGGAATTAC-GATGTGGGCACAGGTTCCATATCGACTGTGTGAATCAA 1090
Query 1063 TGGCTAGTGAGGAAGAACTCTTGTCCCGTCTGTAAAACGATGCCGCACGATAAGTCTTAG 1122
||||| |||||||||||||||||||| ||||||||||||||| || || |||||||||||
Sbjct 1091 TGGCTTGTGAGGAAGAACTCTTGTCCGGTCTGTAAAACGATGGCGTACAATAAGTCTTAG 1150
Query 1123 ATATAGATATTATCTCTTCCTGTGATGTGATTCTTGATTTCGGGATTGAAACCAAATCAC 1182
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 -T-TAGATATTATCTCTTCCTGTGATGTGATTCTTGATTTCGGGATTGAAACCAAATCAC 1208
Query 1183 TATTTTATGTTAAGATTCtttttttggctttttatttatgattgctatttttCTGAGaaa 1242
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1209 TATTTTATGTTAAGATTCTTTTTT-GGCTTTTTATTCATGATTGCTATTTTTCTGAGGAA 1267
Query 1243 aaaaCTGTTGAGACCTTTGTATTACCTATGGAAAAGTCTGGGAGACATTGTGAACCCCAC 1302
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1268 AAA-CTGTTGAGACCTTTGTATTACCTATGGAAAAGTCTCGGAGACATTGTGAACCCCAC 1326
Query 1303 AATTGCGTGTGGGTTTGTTCATC 1325
| |||||||||||||||||||||
Sbjct 1327 A-TTGCGTGTGGGTTTGTTCATC 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210507955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5