BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476517

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G73780.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   388    1e-107


> AT1G73780.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr1:27743872-27744168 
FORWARD LENGTH=297
Length=297

 Score =  388 bits (210),  Expect = 1e-107
 Identities = 270/299 (90%), Gaps = 4/299 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGGGTTCTTGTGCAAAACCAGTGTTGTTCACTTGTGCAATCTTTCTTATTCTCATT  60
            ||||||||||||||  ||||||||||||| ||||||||| ||||| |||| ||| | |||
Sbjct  1    ATGAAGGGTTCTTGCACAAAACCAGTGTTTTTCACTTGTACAATCCTTCTCATTTTAATT  60

Query  61   GTTGCTCAAGAAAATAGAGTCGCTGCATTAGAGCCATGTGATCCTATGAAGTTGAGCCCA  120
            ||||| |||||||| |||||||||||| |||| |||||| |||||  | || |||| |||
Sbjct  61   GTTGCCCAAGAAAACAGAGTCGCTGCAGTAGATCCATGTAATCCTGCGCAGCTGAGTCCA  120

Query  121  TGCTTGGACACCATAACGAAAGGGTCTGAGCCATCGGAACTGTGTTGCA-CAAAGGTGAA  179
            |||||||| ||||||| ||||||||||||||||||||| |||||||||| | ||||||||
Sbjct  121  TGCTTGGAGACCATAATGAAAGGGTCTGAGCCATCGGATCTGTGTTGCAGC-AAGGTGAA  179

Query  180  GGAGCAACAGCACTGTGTCTGCCAGTACTTGAAGAACCCTAACTTCAAATCTTTCCTTAA  239
            |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GGAGCAACAGCATTGTATCTGCCAGTACTTGAAGAACCCTAACTTCAAATCTTTCCTTAA  239

Query  240  CTCACCAAACGCCAAAA-AGATCGCCACTGATTGTCATTGTCCGTATCCCAAATGCTAG  297
            ||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct  240  CTCCCCAAACGCCAAAATA-ATCGCCACTGATTGTCATTGTCCGTATCCGAAATGCTAG  297



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5