BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476520
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:2... 1387 0.0
> AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27759975-27761447
FORWARD LENGTH=939
Length=939
Score = 1387 bits (751), Expect = 0.0
Identities = 846/890 (95%), Gaps = 14/890 (2%)
Strand=Plus/Plus
Query 9 GAATCTCTCTTCTGATTTTCAGACATTTACGATGGATGATGATCCCATAACACAACTAGC 68
|||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||
Sbjct 58 GAATCTCTCTTCTGATTTTCAGACATTTACAAT-G--GATGATCCCATAAGACAACTAGC 114
Query 69 AGAACTGAGCAACACTCTTCATCAGTTCCAAACATTTCCTCCTCCTTTCTCTTCTTGTCT 128
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 115 AGAACTGAGCAACACGCTTCATCATTTCCAAACATTTCCTCCTCCTTTCTCTTCTTCTCT 174
Query 129 CGATTCTCTTTTCTTTCATAATCAATTCCCTGATCATTTTCCCGGAAAACCTCTCGAGAA 188
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 175 CGATTCTCTTTTCTTTCATAATCAATTCCCTGATCATTTTCCCGGAAAATCTCTCGAGAA 234
Query 189 TAATTTTCACCAAGGGATATTCTTCCCTTCTAATATCCAAAACAACGACA-AGTCTTCTT 247
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 235 TAATTTTCATCAAGGGATATTCTTCCCTTCTAATATCCAAAACAACGA-AGAGTCTTCTT 293
Query 248 CA-AGAGTCGATACCAAGAAGAGAAAATCATTAATGGAAGGTGTTTCTACGTCGGAGAAC 306
|| | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 294 CACA-ATTCGATACCAAGAAGAGAAAATCATTAATGGAAGCTGTTTCTACGTCGGAGAAC 352
Query 307 AGTGTCTCTGATCAAACCCTCTCAAGCTCTTCTGCTCAAGTTTCCCTCAATGGAAATAGT 366
||||||||||||||||| ||||| | ||||||||||||||||||| | |||||||||| |
Sbjct 353 AGTGTCTCTGATCAAACTCTCTCTACCTCTTCTGCTCAAGTTTCCATAAATGGAAATA-T 411
Query 367 TT-GACCAAAAATAATTCTTCaagaagagggaagaggtcgaaaaatagagaagaagagaa 425
|| ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 412 TTCGACAAAAAATAATTCTTCAAGGAGAGGGAAGAGGTCGAAGAATAGAGAAGAAGAGAA 471
Query 426 agatagagaagttgttcatgtaagagccagaagagGCCAAGCCACTGATAGCCACAGCAT 485
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 472 AGAGAGAGAAGTTGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGCAT 531
Query 486 AGCAGAGA-GGGTTCGACGAGGGAAAATAAATGAGAGATTGAAATGCTTGCAAGATATAG 544
|||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 532 AGCAGA-ACGGGTTCGACGAGGGAAAATAAACGAGAGATTGAAATGCTTGCAAGATATAG 590
Query 545 TCCCCGGATGTTATAAGACGATGGGAATGGCTACTATGCTGGATGAGATAATTAATTACG 604
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 591 TCCCCGGATGTTATAAGACAATGGGAATGGCTACTATGCTTGATGAGATAATTAATTACG 650
Query 605 TCCAGTCCTTACAAAATCAAGTCGAGTTTTTATCTATGAAGCTTACAGCAGCAAGTTCGT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TCCAGTCCTTACAAAATCAAGTCGAGTTTTTATCTATGAAGCTTACAGCAGCAAGTTCGT 710
Query 665 ATTATGACTTTAACTCGGAGACTGATGCTGTGGAATCCATGCAGAGGGCAAAGGCACGTG 724
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 711 ATTATGACTTTAACTCGGAGACTGATGCTGTGGAATCCATGCAGAAGGCAAAGGCACGTG 770
Query 725 AGGCAGTGGAGATGGGGCAAGGGAGGGATGGGAATTCTGTCTTCCATTCATCATCATGGA 784
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 771 AGGCAGTGGAGATGGGTCAAGGGAGGGATGGGAGTTCTGTCTTCCATTCATCATCGTGGA 830
Query 785 CCctttgacttttgttttt-gctctcctttttttgtctttctaattttct-ccttctttt 842
||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 831 CCCTTTGACTTTTGTTTTTTGCTCTCCTTTTTTTGTCTTTCTAATTTTCTTCCTTTTTTT 890
Query 843 gGATTATAAAAATATACTTTCAAAGATTAATTTCAAGAAATCTCGATGCC 892
||||| |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 891 GGATT-TAAAAAGATACTTTTAAAGATTAATTTCAAGAAATCTCGATGCC 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5