BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476523
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73870.1 | Symbols: | B-box type zinc finger protein with C... 1731 0.0
> AT1G73870.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr1:27779166-27780676 FORWARD LENGTH=1381
Length=1381
Score = 1731 bits (937), Expect = 0.0
Identities = 1176/1289 (91%), Gaps = 25/1289 (2%)
Strand=Plus/Plus
Query 6 ATGGTGGTCGATGTGGAGAGCCGAGCCGTGAGCGTGCCGGGAGGGAAGATGGTGGCGCGT 65
|||||||||||||| ||||||||| ||| ||||||| | |||| |||||||| |||||||
Sbjct 49 ATGGTGGTCGATGTAGAGAGCCGAACCGCGAGCGTGACAGGAGAGAAGATGGCGGCGCGT 108
Query 66 GCCTGCGATGCGTGCATGGAGAGATCACGTGCTAGTTGGTACTGTCCAGCCGAAGACGCT 125
| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 109 GGCTGTGATGCGTGCATGAAGAGATCACGTGCTAGTTGGTACTGTCCAGCCGATGACGCT 168
Query 126 TTCCTATGCCAAAGCTGCGACTCCTCGATCCACTCGGCTAACCATTTAGCGAAACGGCAC 185
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 169 TTCCTATGCCAAAGCTGCGACGCCTCGATCCACTCGGCTAACCATTTAGCGAAACGGCAC 228
Query 186 GAACGCGTCCGGTTACAATCATCTTCGTCGACGGAGACGGCAGACAAAACGACGTCGGTA 245
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 229 GAACGTGTCCGGTTACAATCATCTTCGCCGACGGAGACGGCAGACAAAACGACGTCGGTA 288
Query 246 TGGTACGAAGGTTTCAGGAGAAAGGCGAGAACTCCTAGGAACAAGGGTTTG-GCGTTTGA 304
||||||||||| |||||||||||||||||||| ||||||| |||| | ||| ||||||||
Sbjct 289 TGGTACGAAGGATTCAGGAGAAAGGCGAGAACGCCTAGGAGCAAGAG-TTGTGCGTTTGA 347
Query 305 GAAGTTGTTGCAGGTTGAG-GAGAACGATCCTCTTGTTCCGGATCTTGGTGGAGAAGAAG 363
|||||||||||| | ||| | |||||||||||||||||||| ||||||||||| ||||
Sbjct 348 GAAGTTGTTGCAAATCGAGTCA-AACGATCCTCTTGTTCCGGAGCTTGGTGGAGACGAAG 406
Query 364 AAGAAGTG-TTTTTCTCGTTCTCTTCCGTAGAAGAAAACGACGAGAGTCTGAATTGTTGC 422
| || | | |||||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 407 ATGATG-GCTTTTTCTCGTTCTCCTCCGTAGAAGAAACCGAGGAGAGTCTGAATTGTTGC 465
Query 423 GTGCCAGTTTTCGATCCTTTCTCAGACATGGTGATTGATGATATCAACGGCTTTTGCTTA 482
||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 466 GTGCCTGTTTTCGATCCTTTCTCAGACATGCTGATTGATGATATAAACGGCTTTTGCTTA 525
Query 483 GTTCCCGATGAAGTCATCAATAACACTACTAATGGA-GAAGAACTAGGAGAACTCGAG-A 540
||||| ||||||| ||||||||||||||| | | | |||| |||||||| ||||| |
Sbjct 526 GTTCCTGATGAAG---TCAATAACACTACTACT-AATGGAGAATTAGGAGAAGTCGAGAA 581
Query 541 GGGAAGTCATGGACGATGAAGGTTTTATTGGGTTCTTGCCGTTGAATATGGATCTTGAGG 600
|| || |||||||||||||||||||||| |||||| |||| ||| |||||||||||||||
Sbjct 582 GGCAA-TCATGGACGATGAAGGTTTTATGGGGTTCGTGCCATTGGATATGGATCTTGAGG 640
Query 601 ATCTCACTATGGATGTGGAGAGGTTACTTGAGGAAGAACAACTTTGCTTGGGATTCAAGG 660
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 641 ATCTCACTATGGACGTGGAGAGTTTACTTGAGGAAGAACAACTTTGCTTGGGATTCAAGG 700
Query 661 AACCAAACGATATTGGAGTTATCAAAGAAGAGAATAACGTAGAGTTTGAGATTAATTGTA 720
||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 701 AACCAAACGATGTTGGAGTCATCAAAGAAGAGAATAAAGTAGGGTTTGAGATTAATTGTA 760
Query 721 AGGATTTGAAGAGGGTTAAAGAT---GA-G--GAAGAAGAAGAAGCCAAGTGTGAAAATG 774
|||||||||||||||| |||||| || | ||||||||||||||||||||||||||||
Sbjct 761 AGGATTTGAAGAGGGTGAAAGATGAAGATGAAGAAGAAGAAGAAGCCAAGTGTGAAAATG 820
Query 775 GAGGATCAAAGGATAGTGATGGAGAAGCATCTAAGGATGAAGATGGAAAGACGAGTTTGT 834
|||||||||||||||||||| |||||||||| || ||| ||||| ||||||| |||||||
Sbjct 821 GAGGATCAAAGGATAGTGATAGAGAAGCATCAAATGATAAAGATAGAAAGACAAGTTTGT 880
Query 835 TTCTGAGATTAGATTATGAAGCTGTGATTAGTGCTTGGGATAATCATGGTTCGCCGTGGA 894
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 881 TTCTGAGATTAGATTATGGAGCTGTGATTAGTGCTTGGGATAATCACGGTTCGCCGTGGA 940
Query 895 AAACCGGAATCAAATCGGAGTGCTTGTTGGGAGGGAACACGTGTCCGTCACATGCTGTAG 954
|||||||||||||| |||||||| ||||||||||||||||||||| | | |||| ||| |
Sbjct 941 AAACCGGAATCAAACCGGAGTGCATGTTGGGAGGGAACACGTGTCTGCCTCATGTTGTGG 1000
Query 955 GTGGGTTCGATG-AGTTGGTGTCGCCCGTCGGATCGGTGACACGCCAGCAAGTGAGAGAC 1013
|||||| ||| | | ||| ||||| || ||||||||||||||| ||||||| |||||||
Sbjct 1001 GTGGGTACGA-GAAATTGATGTCGAGCGACGGATCGGTGACACGTCAGCAAGGGAGAGAC 1059
Query 1014 GGAGGAGGATCGGACGGGGAGAGAGAGGCGAGGGTTTTGAGGTACAAGGAGAAACGGAGG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1060 GGAGGAGGATCGGACGGGGAGAGAGAGGCGAGGGTTTTGAGGTACAAGGAGAAGCGGAGG 1119
Query 1074 ACGAGATTGTTCTCAAAGAAGATAAGATACGAGGTTCGGAAACTCAATGCCGAGCAGAGA 1133
||||| |||||||||||||| |||||||| |||||||||||||| || || |||||||||
Sbjct 1120 ACGAGGTTGTTCTCAAAGAAAATAAGATATGAGGTTCGGAAACTTAACGCTGAGCAGAGA 1179
Query 1134 CCTCGAATCAAAGGTCGGTTCGTGAAGAGAACGTCACTTTTGACGTGATTTGATTTACTT 1193
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1180 CCTCGAATCAAAGGTCGTTTCGTGAAGAGGACGTCACTTTTGACGTGATTTGATTTACTT 1239
Query 1194 TAATGAACACTTTAAAGAGCTTGTAATTAAGAACTTTGAAGTAATTGTGGTAATGTACT- 1252
|||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1240 TAATCAACACTTTAAAGATCTTGTAATTAAGACCTTTGAAGTAATTGTCGTAATGTACTG 1299
Query 1253 ACA-AATTTAACTGAAAATCTTGGGGCCG 1280
| | ||| |||||||| |||||||||||
Sbjct 1300 A-ATAATG-AACTGAAACTCTTGGGGCCG 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001683975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5