BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476531
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73930.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 3578 0.0
> AT1G73930.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1630 (InterPro:IPR012860);
Has 290 Blast hits to 263 proteins in 104 species: Archae
- 0; Bacteria - 0; Metazoa - 148; Fungi - 30; Plants -
49; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
| chr1:27795120-27797981 REVERSE LENGTH=2546
Length=2546
Score = 3578 bits (1937), Expect = 0.0
Identities = 2164/2273 (95%), Gaps = 17/2273 (1%)
Strand=Plus/Plus
Query 163 TGATTTGATCTAACATTTTGAGCTTACAAATTTTCTTTCTTTGGGATTCAATTTCAGGCT 222
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TGATTTGATCTAACGTCTTGAGCTTACAAATTTTCTTTCTTTGGGATTCAATTTCAGGCT 304
Query 223 GCGAAAGTGTTTCGTGAAGCAAACCCACCAAATCTGAGCTTATTAGTATAAGCTAAAGAT 282
||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 305 GCGAAAGTGTTTCATGAAGCTAACCCACCAAATCTGAGC---TTAGTATAAGCTAAAGAT 361
Query 283 TCAAGCTTTGATGAATCTCCTCAATTGCGGAAGTATAAGGTATGAT-AAGTTTGATGGGT 341
|||| |||||||||| || ||||||| |||||||||||| | ||| | ||||||||| |
Sbjct 362 TCAAACTTTGATGAAGCTTTTCAATTGGGGAAGTATAAGGGACGATGAGGTTTGATGGAT 421
Query 342 ATGAGAGTTTCTTGGTTACATTTGAAATGAGTCGGTCTCCATCGTTTTCTGCGAAGCCTG 401
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 422 AGGAGAGTTTCTTGGTTACATTTGAAATGAGTCGGTCTCCATCGTTTTCTGTGAAGCCTG 481
Query 402 AGCTTAGTATAAAGCCTGATCCTGAGTCTTTGAAACGATGGATTCATGCATTTTGCATTA 461
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 482 AGCTAAGTATAAAGCCTGATCCTGAGTCATTGAAACGATGGATTCATGCATTTTGCATTA 541
Query 462 TGAGGTTTGATCTTGAGCAAGGGCAGCTCTTAGAAGAGTGTTATCCACCAGATTGCCTCT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 542 TGAGGTTTGATCTTGAGCAAGGGCAGCTCTTAGAAGAGTGTTATCCACCAGATTGTCTCT 601
Query 522 CACAAGAAGAGGAAATTGAGGTTTCTTTCAACTCTTTCCCGGATTCTGTCTCACAGCATC 581
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 602 CACAAGAAGAGGAAATTGAGGTTTCTTTTAACTCTTTCCCGGATTCTGTCTCACAGCATC 661
Query 582 ATAATCGCTCAAGCATACATGACTGCATTTTCTTTTTCCGGTTTCGTAGACCAAAGAAGA 641
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ATAATCGTTCAAGCATACATGACTGCATTTTCTTTTTCCGGTTTCGTAGACCAAAGAAGA 721
Query 642 ACACTGAGGAGAGAGATGATATTGATAGGTACTTGTATGGTTATGTATTTAATAGGCAGA 701
|||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 722 ACACTGAGGAGAGAGATGGTAGTGAGAGGTACTTGTATGGTTATGTATTTAATAGGCAGA 781
Query 702 GGCATGATGAAAGATTGAAAAGGGGAGGTGAACAGAAGTCTGTGGTGATATTATCCCATA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 782 GGCATGATGAAAGATTGAAAAGGGGAGGTGAACAGAAGTCTGTGGTGATATTATCGCATA 841
Query 762 CGCCTTACTCGAGTGTTTTTAGGCCTTTGTTGCAAATCATTGGTCCTTTGTATTTTGATG 821
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGCCTTACTCGAGTGTGTTTAGGCCTTTGTTGCAAATCATTGGTCCTTTGTATTTTGATG 901
Query 822 TTGGAAATAAGGCTATCGAACATATTGCTCGTTATGTCTCTATGTGGCCTGCTCCTGTGC 881
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 902 TTGGAAATAAGGCTATTGAACATATTGCTGGTTATGTCTCTATGTGGCCTGCTCCTGTGC 961
Query 882 CCGGTAAGCTAATGGAGCTGCCGATTGGTAATGCAATTCTTAAGGTGAACTTGCCTCCTG 941
| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 962 CTGGTAAGCTAATGGAGCTGCCTATTGGTAATGCAATGCTTAAGGTGAACTTGCCGCCTG 1021
Query 942 CTCATAGCCTTCCCTTGGAAAATGGGATTTTATATGAGGAATCTGCCTCTTCCATGGCTC 1001
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1022 CTCATAGCCTTCCCTTGGAAAATGGGATTTTATATGAGGAATCTGCTTCTTCCATGGCTC 1081
Query 1002 CATTGCTCCCTACAAATCAATCTGTTCCTCAAGGTCTTTTCCATGACGCAGATCTTTTTG 1061
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CATTACTCCCTACAAATCAGTCTGTTCCTCAAGGTCTTTTCCATGACGCAGATCTTTTTG 1141
Query 1062 GCATTTACCGTGGACTATTGTTGCAGCTATGGACATTGTGGGAATTGTTACTCATAGGCG 1121
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1142 GCATTTACCGGGGACTATTGTTGCAGCTATGGACATTATGGGAATTGTTACTCATAGGCG 1201
Query 1122 AGCCTATTCTTATTATAGCACCAACACCTCCCCAATGTTCCGAGGCAGTTGCTTGTCTTG 1181
|||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1202 AGCCCATCCTTATCATAGCACCAACACCTCCGCAATGTTCTGAGGCAGTTGCTTGTCTTG 1261
Query 1182 TGAGTTTGGTTGCGCCGCTATTTTGTAGCATTGACTTTAGACCATATTTCACTATACATG 1241
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1262 TGAGTTTGGTTGCGCCGCTATTTTGTAGTGTCGACTTTAGACCATATTTCACTATACATG 1321
Query 1242 ATCCAGGATTTGCTCGACTAAACTCTCTCCGAGAAGGAGACACTTTCCCGCCAATGGTTT 1301
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1322 ATCCAGGATTCGCTCGACTAAACTCACTCCGAGAAGGAGACACTTTCCCGCCAATGGTTT 1381
Query 1302 TGGGTGTCACCAATCTCTTTTTCCTTAAAGCTCTTCGCAATATCCCTCATGTTGTCTCAG 1361
|||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1382 TGGGTGTCACCAATATCTTTTTCCTTAAAGCTCTTCGTAACATCCCTCATGTTGTCTCAG 1441
Query 1362 TTGGAACCCCTGCTCCAAACTCAAACCGTGTAGCATTTACAAGTAGGTCGGCTGGTAAAT 1421
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1442 TTGGAACCCCTGCTCCAAACTCAAACCGTGTAGCCTTTACAAGTAGGTCGGCTGGTAAAT 1501
Query 1422 TATCTGTTAAATCTGAAGGATTAGGCATCCAACAGCTTTCATTAAGAAGGTTCTCTCCTA 1481
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1502 TATCTGTTAAACCTGAAGGATTAGGCGTCCAACAGCTTTCATTAAGAAGGTTCTCTCCTA 1561
Query 1482 CAAATTTGCTAAATGCCGTAAAACTTAGGCGAGATGGACCTCTTTGTCTCATGACAGAGC 1541
|||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1562 CAAATTTGCTCAATGCTGTAAAACTTAGGCGAGATGGACCTCTGTGTCTCATGACAGAAC 1621
Query 1542 ACAAGGAAGCTGTCTGGACCACCCACTCTGCAATAACCAAGCCAGACACTTCTATTTTGA 1601
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 1622 ACAAGGAAGCTGTCTGGACCACCTACTCTGCAGTAACCAAGCCAGACACTTCGATTTTGA 1681
Query 1602 ATAGACTTATTGATGCTGGGATGTCGCCAAGGGTTGAGGAGTCAATGTCAGTTGTGAATA 1661
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1682 ATAGACTTATTGATGCTGGGATGTCGCCAAGGGTTGAGGAGTCGATGTCAGTTGTGAATA 1741
Query 1662 ATGAGATTCTGCGACGCCATTTCCTGGAATTAACTACAAATTTCTTGGCCCCTTTTGGTC 1721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 ATGAGATTCTGCGACGCCATTTCCTGGAATTAACTACAAATTTCTTGGCCCCTTTTGGTC 1801
Query 1722 CATATTTCCAGGTCAATGCTCCTTCTGATGGGTCTTCCCCATATGTTACCCCTCCTGCGC 1781
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1802 CATATTTCCAGGTCAATGCTCCTTCAGATGGGTCTTCCCCATATGTTACCCCTCCTGCGC 1861
Query 1782 TCCCATCATTTGGTGCGGATGAATTCCTTTCGAATTTATCTGCGAGAGGTGTAGGGAAGT 1841
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1862 TCCCATCATTTGGTGCTGATGAATTCCTTTCAAATTTATCTGGGAGAGGTGTAGGGAAGT 1921
Query 1842 TTTTGTCTAAACGAATGAAATCCAACTGGCCCGACTTGTATAGGCGGTTTCTACGAGGGC 1901
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1922 TTTTGTCTAAACGGATGAAATCTAACTGGCCCGACTTGTATAGGCGGTTTCTACGAGGAC 1981
Query 1902 CCAACTTTAT-GCCTTGGTTTCAAAGACGGCGTGCTGTTGCCGAACAAGAACAGCGTAGA 1960
|||||||| | ||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 1982 CCAACTTT-TCGCCTTGGTTCCAAAGACGGCGAGCTGTTGCTGAACAAGAACAGCGTAGA 2040
Query 1961 TTATGGAGGCTAGCTAGAATGAAGACTGATATGAGGCAGATTACGTCTCAGATGAATGAA 2020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 TTATGGAGGCTAGCTAGAATGAAGACTGATATGAGGCAGATTACGTCTCAGATGAATGAA 2100
Query 2021 TTGGAAGCTGTGGATTCCTTCAATGCCATTGAGAAACACATTAGTGAGGAAGTCAAAGAA 2080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2101 TTGGAAGCTGTGGATTCCTTCAATGCCATTGAGAAACACATTAGTGAGGAAGTCAA-GTC 2159
Query 2081 TCAGGAGG-AGGAGGTGGTGCAGATTCGGAAGGAACATTTCAGAAACTGAAGAAGGATCT 2139
| ||| |||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2160 GCTGGAATCAGGAGGAGGTGCAGATTCAGAAGGAACGTTTCAGAAACTGAAGAAGGATCT 2219
Query 2140 ACAAGCGGTGTTCAGTGTGCTTCCAAGGGACATGCAGCAACTTCTGCTTTTAAATCCGCA 2199
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 2220 ACAAGCGGTGTTCAGTGTGCTTCCAAAGGACATGCAGCAACTTCTGCTTTTAAATCCACA 2279
Query 2200 AAGAGCATCTCTTCTTCAAGATCCATCAGAGCTCTATTGAATCCCTCCCTCTTCTTCACT 2259
|||||||||||||||||||||||||||||||||| | ||||| | || | | |||||||
Sbjct 2280 AAGAGCATCTCTTCTTCAAGATCCATCAGAGCTCCAATGAATGC-TC--T-T-CTTCACT 2334
Query 2260 -CGGGCTTCCATGAGGATTCTGATTTCTTTTCTTCCCTTT-CTGTTTCATTCTTTGAACT 2317
||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2335 ACGG-CGTCCATGAGGATTCTGATTTCTTTTCTTCCCTTTTCTGTTTCATTCTTTGAACT 2393
Query 2318 ATGCCaaagaaaaaagagaaaaaTTCTTCATCTTCCCTAATTGTTTACTCGtttttttCT 2377
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2394 GTACCAAAGAAAAAAGAGAAAAATTCTTCATCTTCCCTAATTGTTTACTCGTTTTTT-CT 2452
Query 2378 CACGAAACATGGGAATCACACGACACCGAAATCACTGATCACTGCTGTATTTT 2430
|||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 2453 TTTGAAACATGAGAATCACACAACACCGAAATCACTGATCACTGCTGTATTTT 2505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120682110180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5