BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476532
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 841 0.0
> AT1G73940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G49410.2);
Has 54 Blast hits to 54 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27798313-27799596
REVERSE LENGTH=736
Length=736
Score = 841 bits (455), Expect = 0.0
Identities = 621/694 (89%), Gaps = 39/694 (6%)
Strand=Plus/Plus
Query 1 AAGAGAGTGAGAGTGACGGCGAGGAAGAAGA-AAGATGTGGTTCGCCGGCGGTGGAGGTG 59
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 41 AAGAGAGTGAGAGTGACGGCGAGGAAGAAGAGAA-ATGTGGTTCGCCGGCGGTGGTGGTG 99
Query 60 GACTGAGGAAGCTCTGCAGA--G-C-G-----TTCGATAATGAGATTACATACAACTCTT 110
|||||||||||||||||||| | | | |||||||||||||| | || |||||||
Sbjct 100 GACTGAGGAAGCTCTGCAGAGCGTCGGCTATTTTCGATAATGAGATAAGTTATAACTCTT 159
Query 111 TGTTGGTGAGATACATGTCGAGAGAACGAGCAGTGAACGTCCGGAAGATAAACCCTAAAG 170
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 160 TGTTGGTGAGATACATGTCCAGAGAACGAGCTGTGAACGTCCGGAAGATAAACCCTAAAG 219
Query 171 TTCCGATCCAAGAAGCTTACGCCATTTCTAATTCTCTCTACGATCTCTTTAAGCTACATG 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 TTCCGATCCAAGAAGCTTACGCCATTTCTAATTCTCTCTACGATCTCTTTAAGCTACATG 279
Query 231 GTCCTCTTTCCGTTCCCAACACTTGGCTCCGCGCTCAGGAAGCTGGGGTTAGTGGACTGA 290
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GTCCTCTCTCCGTTCCCAACACTTGGCTCCGCGCTCAGGAAGCTGGGGTTAGTGGACTGA 339
Query 291 ACAGCAAAACGCACATGAAGCTAGTGTTGAAATGGATGAGAGGGAAAAAGATGCTCAAGT 350
| |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 340 ATAGCAAAACACATATGAAGCTATTGTTGAAATGGATGAGAGGGAAAAAGATGCTCAAGT 399
Query 351 TAATTTGCAACCAAGTTGGTTCCTCCAAAAAGTTTTTCCACACCGTTTTACCTGAAGATC 410
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 400 TAATCTGCAACCAAGTTGGTTCCTCCAAAAAGTTTTTCCACACTGTTTTACCTGAAGATC 459
Query 411 CTCTACAAGTTCAACCGGCTGCTCCGGTTGAGCACCACAAACAAGCCTTCAAAAAGAAAC 470
||||||||| ||||||||||||||| ||||| || | ||||||||| |||| |||||||
Sbjct 460 CTCTACAAGAACAACCGGCTGCTCCGATTGAGAACAAGAAACAAGCCGTCAAGAAGAAAC 519
Query 471 GAAGCAAATAAGGAAACTGGAGAGAGCA--T-T--GT------T-T-----------CTG 507
|||||||||||||||||||||||||||| | | || | | |||
Sbjct 520 GAAGCAAATAAGGAAACTGGAGAGAGCAAATCTCTGTGGACAATATTTTGTTTGTTTCTG 579
Query 508 TCTCCAAGGGTATGAATTCTTTAAATCTGTTCCTAGTCTGAGAGAAAACATTTTT-AGTT 566
|||||||||| ||||||| ||| |||||||| ||||||| ||||||||| ||||| ||||
Sbjct 580 TCTCCAAGGGAATGAATTGTTTGAATCTGTTTCTAGTCTCAGAGAAAACGTTTTTTAGTT 639
Query 567 G-TGGTGTAGAAATTCTTGGGAAAGACAGGAT---TTACCTTGATCTATGAAACTCCGTC 622
| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 640 GCTGGTGTAGAAATTCTTGAGAAAGTCAGGAGGACTTACCTTGATCTATGAAACTCCTTT 699
Query 623 CCCTTCAATAAAAGAGGATCAATTACCTCTGCAC 656
||||||||||||||||||||| ||||||||||||
Sbjct 700 CCCTTCAATAAAAGAGGATCAGTTACCTCTGCAC 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31697746757
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5