BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476536
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73965.1 | Symbols: CLE13 | CLAVATA3/ESR-RELATED 13 | chr1:2... 808 0.0
> AT1G73965.1 | Symbols: CLE13 | CLAVATA3/ESR-RELATED 13 | chr1:27815797-27816468
FORWARD LENGTH=672
Length=672
Score = 808 bits (437), Expect = 0.0
Identities = 604/680 (89%), Gaps = 30/680 (4%)
Strand=Plus/Plus
Query 1 GATGGTTCTATGATCTTTAATTTCCATGGCGACGACTAGAGTCTCACATGTCTTAGGttt 60
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GATGGTCCTATGATCTTTAATCTCCATGGCGACGACTAGAGTCTCACATGTCTTAGGGTT 60
Query 61 ttttCTATGGATCTCTCTTCTCATCTTCGTCTCTAAAGGGTTGTTTGGCAATTTCAGCTC 120
| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 61 TCTTCTATGGATCTCTCTTCTCATCTTCGTCTCCATAGGGTTGTTTGGCAATTTCAGCTC 120
Query 121 CAAATCCATAAACTATTTCCCTTCTCCAGTTATTACCTTGCC-GCCCTTTTCCTACCGGC 179
|||| |||||||| ||| |||||||| |||||||||||||| |||| ||| ||||||||
Sbjct 121 CAAACCCATAAACCCTTTTCCTTCTCCGGTTATTACCTTGCCGGCCC-TTTACTACCGGC 179
Query 180 CGGGAAGGAGAGTTTTGGCGGTGAAAACGTTTGACTTCACACCGTTCTTGAAAGATAGTG 239
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CGGGAAGAAGAGCTTTGGCGGTGAAAACGTTTGACTTCACACCGTTCTTGAAAGATCTTC 239
Query 240 GCCGGAGTAATCACT-GGAAAGATTTGCCGCCGGGAGGATCAGAAATCGATCCGAGATAT 298
||||||||||||| | |||||| ||||||| |||||||||| || || || |||||||||
Sbjct 240 GCCGGAGTAATCA-TCGGAAAGCTTTGCCGGCGGGAGGATCCGAGATTGACCCGAGATAT 298
Query 299 GGCGTTGAGAAACGGCTCGTCCCATCTGGTCCAAACCCCTTGCACCACTGAATTGTCTTC 358
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 GGCGTTGAAAAACGACTCGTCCCATCTGGTCCAAACCCCTTGCACCACTGATTTGTCTTC 358
Query 359 TTAATTTTTGCTTTAAATTTTCTTTATATTTTCATAGATATAGTAAAACACGTATATGAC 418
|||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 359 TTAATTTTTGCTTTAAGTTTTCTTTATTTTTTCAAAGATATAGTAAAACACGTATATTT- 417
Query 419 TAATAATACTAGAAGATTAATTATTCATCAGATGAA-AGCTAATATTCTTTCTTGGTACG 477
|| ||||||||||||||||||| ||| |||| | ||||||||||||||||||||| |
Sbjct 418 TACTAATACTAGAAGATTAATT---CATAAGAT-ATTAGCTAATATTCTTTCTTGGTATG 473
Query 478 TATATGTCTTGGAttttttttttattcttctttgtcatgtgaagtt-tttatttttcact 536
||||||||||| ||| ||| ||||||||||||||||||| || ||| |||||||||
Sbjct 474 TATATGTCTTGAATTATTT----ATTCTTCTTTGTCATGTGAT-TTATTT-TTTTTCACT 527
Query 537 tttggtgtaatgatgtaatttactcatctttttattattt-ttcatttGATG-TA--C-T 591
| |||||||||||||||||||||||||||||||||| ||| |||||||||| || | |
Sbjct 528 TCTGGTGTAATGATGTAATTTACTCATCTTTTTATTCTTTCTTCATTTGATACTAATCGT 587
Query 592 AATAATAATAAAACATCATGTACGTaagaaaaagaaaagaaaagaaaagaTCATGTACAC 651
|||||||||| ||||||||| | | | |||| |||||||||||||||||||||
Sbjct 588 TGTAATAATAAAGCATCATGTA---A-GCA---GAAAT-AAAAGAAAAGATCATGTACAC 639
Query 652 ATTTGTTTAAATGCCAAAAA 671
||||||||||||||||||||
Sbjct 640 ATTTGTTTAAATGCCAAAAA 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32451258962
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5