BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476537
Length=2579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73970.1 | Symbols: | unknown protein; Has 34 Blast hits to... 3986 0.0
> AT1G73970.1 | Symbols: | unknown protein; Has 34 Blast hits
to 33 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:27816814-27820078 FORWARD
LENGTH=2853
Length=2853
Score = 3986 bits (2158), Expect = 0.0
Identities = 2449/2589 (95%), Gaps = 22/2589 (1%)
Strand=Plus/Plus
Query 1 ACGATTTTTCTGGGTTTATTCAGCTCTGAATCAATCCATAATCTATCGTGATTTAGGGCT 60
||||||||||||||||| ||||| | || ||||||||||||||| |||||| |||||| |
Sbjct 228 ACGATTTTTCTGGGTTT-TTCAGTTTTGGATCAATCCATAATCTGTCGTGA-TTAGGGTT 285
Query 61 TAATA-CTTGATGAGAATCTACTGAATTAGTCCTAGTT-AAGATGGCGAGAAAAGCTAAC 118
| ||| ||||||||| || |||||||||||| || || |||||||||||||||||||||
Sbjct 286 TTATACCTTGATGAGGATTTACTGAATTAGTTGTA-TTAAAGATGGCGAGAAAAGCTAAC 344
Query 119 AACAGTCTGTTCCTTGAAGAATGGTTAAGGACTGTGAGTGGAAGTAGTGTCTCTGGTGAT 178
|| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 AATAGTTTTTTCCTTGAAGAATGGTTAAGGACTGTGAGTGGAAGTAGTGTCTCTGGTGAT 404
Query 179 TTAGTGAAGCAAAATTCTGCTCCATCTGCGAGGTCGATTATTCAAGCATGGTCTGAGATT 238
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 405 CTAGTGAAGCAAAATTCTGCTCCATCTGCTAGGTCGATTATTCAAGCATGGTCTGAGATT 464
Query 239 CGTGAATCTCTCCAAAACCATAACTTTGATACACGTTATCTTCAAGCTTTGAGAGCTTTG 298
||||||||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 465 CGTGAATCTCTTCAAAACCAAAACTTTGATTCACGTTACCTTCAAGCTTTGAGAGCTTTG 524
Query 299 GTTAGCTCTGACTCCACTATCCATGTCGCAGATCCCCAAGCAAAGCTACTTATATCCATA 358
||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 525 GTTAGCTCTGAGTCCACTATCCATGTTGCAGATCCCCAAGCAAAGCTACTTATTTCTATA 584
Query 359 TTAGCTTTACGAGAAGATGTATCTCTTCCGTGTGACTCTTACACACTTGTTCTCAGACTA 418
||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 585 CTAGCTTTTC---AAGATGTATCTCTTCCGTCTGAGTCTTACACACTTGTTCTCAGACTA 641
Query 419 CTCTATGTGTGGATTAGGAAAGCATTTCGACCGTCTCAAGCTCTTGTTGGT-TCAGCGGT 477
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 642 CTCTATGTGTGGATTAGGAAAGCATTTCGACCGTCTCAAGCACTTGTTGGTGT-AGCGGT 700
Query 478 TCAGGCCATTCGTGGTGTTGTTGATGACAGGCGTAATCTCCAACCAACTTTAGTAGCGCA 537
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 701 TCAGGCCATTCGTGGCGTTGTTGATGACAGGCGTAATCTCCAACCAGCCTTAGTAGCGCA 760
Query 538 GAGCGTTCTGGTTTCTGGTGCCTTTGCGTGTGTTCCTTCTCTGTCTGGAGACTTGAAATT 597
||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |
Sbjct 761 GAGTGTTCTGGTTTCTGGTGCGTTTGCGTGTGTTCCTTCTCTGTCAGGAGACGTGAAAGT 820
Query 598 CTTATGCTTGGAACTGTTATGCAGGCTTTTGGAAGAAGAGTACTCATTGGTGGGATCTCA 657
||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 821 CTTATGCTTGGAATTGTTATGCAGGCTTTTGGAAGAAGAGTACTCTTTAGTGGGATCTCA 880
Query 658 AGAAGAACTTGTTCCTGTACTGCTTGCAGGAATTGGGTATGCTTTATCTTCTTCGCTGGA 717
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 881 AGAAGAACTTGTTCCTGTAGTGCTTGCAGGAATTGGGTATGCTTTATCTTCTTCGTTGGA 940
Query 718 TGTTCATTACCTTAGACTATTGGATTTATTGTTTGGCATTTGGTTAAAAGACGAGGGTCC 777
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TGTTCATTACGTCAGACTATTGGATTTATTGTTTGGCATTTGGTTAAAAGACGAGGGTCC 1000
Query 778 TCGTGGCAGTGTCACTTATGGTCTGATGATTCTTCATTTGATCGAGTGGGTTGTGTCAGG 837
|||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1001 TCGTGGCACTGTCACTTACGGTCTGATGATTCTTCATTTGATTGAGTGGGTTGTGTCAGG 1060
Query 838 TTATATGAGGTCTAATTATATCAACAAGATGTCTCTTTTTGGGAACGAGGTTCTCGAGAC 897
||||||| ||||||||| ||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1061 TTATATGCGGTCTAATTCTATCAACAAGATGTCTCTTTTTGCGAACGAGGTACTAGAGAC 1120
Query 898 TTCTAAGGAAAAGTATACTGTTTTTGCTGTCTTCATGGCAGCAGCTGGGGTACTGAGAGC 957
|||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1121 TTCTAAGGAAAAGTATGCTGTTTTCGCTGTCTTCATGGCAGCAGCTGGGGTAGTGAGAGC 1180
Query 958 TTCCACGGCAGGATTCAGTAGTGGCGCACAGAGTTTTGAGATTTCTAAACTAAGAAATTC 1017
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1181 TTCCACGGCAGGATTCAGTAGTGGTGCACAGAGTTTGGAGATTTCTAAACTAAGAAATTC 1240
Query 1018 AGCTGAAAAGCGAATAGAATTTGTAGCTCAACTTTTAGTGTCTAATGGT-A--TTGTTAC 1074
||||||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||
Sbjct 1241 AGCTGAAAAGCGAATAGAATTTGTAGCTCAAATTTTAGTTTCTAATGGTAATGTTGTTAC 1300
Query 1075 ACTTCCAACCATTCAGAGAGAAGGTCCTCTGTTGAAGTGCTTTGCTATAGGATTGGCTCG 1134
||||||||||| |||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1301 ACTTCCAACCACACAGAGAGAAGGTCCCCTGTTGAAGTGCTTTGCTATTGCATTGGCTCG 1360
Query 1135 ATGTGGGTCTGTTCCTTCCTCTGCTCCTCTGCTTTTGTGTCTCACTTCTGCATTGTTAAC 1194
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 ATGTGGGTCTGTTTCTTCCTCTGCTCCTCTGCTTTTGTGTCTCACTTCTGCATTGTTAAC 1420
Query 1195 TCAGGTATTTCCTTTAGGCCAGATATATGAATCATTTTGCAAAGCTTTTGGCGAAGAGCC 1254
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1421 TCAGGTATTTCCTTTAGGCCAGATATATGAATCATTTTGCAATGCTTTTGGCAAAGAGCC 1480
Query 1255 TATTGGACCAAGACTCATTTGGGTCAGGGAGCATCTCTCTAATGTTCTTTTCAAAGAATC 1314
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1481 TATTGGACCAAGACTCATTTGGGTCAGGGAGCATCTTTCTGATGTTCTTTTCAAGGAATC 1540
Query 1315 AGGGGCCATAACTGGGGCTTTCTGCAATCAATATAT-ATCAGCAAGTGAAGAGAACAAGT 1373
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1541 AGGGGCCATATCTGGGGCTTTCTGCAATCAATAT-TCATCAGCAAGTGAAGAGAACAAGT 1599
Query 1374 ATATTGTGGAGAATATGACTTGGGATTTCTGTCAAAATCTCTACTTACAGCACCGTCAAA 1433
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 ATATTGTGGAGAATATGATTTGGGATTTCTGTCAAAATCTCTACTTACAGCACCGTCAAA 1659
Query 1434 TTGCTCTGTTGCTTCGTGGTATAGAAGATACATTGCTTGGAGACATAGAAAAAATTGCAG 1493
||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1660 TTGCTATGTTGCTTTGTGGTATAGAAGATACATTGCTTGGAGACATCGAGAAAATTGCAG 1719
Query 1494 AATCATCTTTCCTTATGGTTGTTGTCTTTGCGCTAGCTGTTACGAAGCAATGGTTAAAAC 1553
|||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||
Sbjct 1720 AATCATCTTTCCTTATGGTTGTCGTCTTTGCGCTAGCTGTTACGAAACAATGGCTAAAAC 1779
Query 1554 CACTAGTGTCTAAAGAAAGAAAAATGGAGACATCAGTTAAGATATTAGTTTCGTTCTCCT 1613
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1780 CAATAGTGTCTAAAGAAAGAAAAATGGTGACATCAGTTAAGATATTAGTTTCGTTCTCCT 1839
Query 1614 GTGTAGAGTATTTCAGACATATTCGTTTACCTGAATACATGGAGACAATTAGAGAGGTGA 1673
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 GTGTAGAGTATTTCAGGCATATTCGTTTACCTGAATACATGGAGACAATTAGAGAGGTGA 1899
Query 1674 TTTCATGTGTCCAGGAGAATGATGCTCCTTGTGTTTCATTTGTAGAGTCTATTCCTGCCT 1733
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1900 TTTCATGTGTCCAGGAGAATGATGCTCCTTGTGTTTCATTTGTAGAGTCCATTCCTGCCT 1959
Query 1734 ATAATAGCTTGACGACTCCGAGAGACTTGTTTACGCAGAGGATAAAATATGAATGGTCAA 1793
|| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1960 ATGATAGCTTGACGAATCCGAAAGACTTGTTTACGCAAAGGATAAAATATGAATGGTCAA 2019
Query 1794 GAGATGATGTGCAGACATCTCGAATACTGTTTTATCTTCGAGTAATCCCAACTTGCATTG 1853
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2020 GAGATGATGTGCAGACATCTCGAATATTGTTTTATCTTCGAGTAATCCCAACTTGCATCG 2079
Query 1854 GACGGTTATCTGCTTCTGACTTCAGGGGAGTCGTTGCATCAACCATGTTTTTATATATTG 1913
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2080 GACGGTTATCTGCTTCTGCCTTCAGGGGAGTGGTTGCATCAACCATGTTTTTATATATTG 2139
Query 1914 GACATCCTAACAGAAAAGTGGCG-AGAGCATCTCATACGTTGTTGGTAGCATTTCTCTCT 1972
||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 2140 GACATCCTAACAGAAAAGTGGCGCA-AGCATCTCATACGTTGTTGGCAGCATTTCTCTCT 2198
Query 1973 TCAGCAAAAGAATCAGAGGAGGACGAACGAAAC-CAACTCAAAGAACACCTTGTTTTCTA 2031
||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||
Sbjct 2199 TCAGCAAAAGAATCAGAGGAGGACGAACG-AACTCAATTCAAAGAACAACTTGTTTTCTA 2257
Query 2032 TTACATGCAACGATCTTTGGAGGGTTACCCTGAAATCACACCTTTTGAAGGTTTAGCTTC 2091
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2258 TTACATGCAACGATCTTTGGAGGTTTACCCTGAGATCACACCTTTTGAAGGTTTAGCTTC 2317
Query 2092 CGGCGTTGCAACCTTGGTCCGGCATCTACCTGCAGGAAGTCCTGCTATATTTTATTCTGT 2151
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2318 CGGCGTTGCAACCTTGGTCCAGCATCTACCTGCGGGAAGTCCTGCTATATTTTATTCTGT 2377
Query 2152 CCATAGCCTTGTTGAGAAGGCTTCTACATTTAGCACC-AATTCTTTGCAAGGAAGAAAGT 2210
|||||||||||||||||||||||||||||||||||| || || |||||||| |||||||
Sbjct 2378 TCATAGCCTTGTTGAGAAGGCTTCTACATTTAGCACCGAA-TCATTGCAAGGCAGAAAGT 2436
Query 2211 CCGATCCTGGTAATCAAATTCTTGAGTTGCTTTTGCGACTTGTCTCTCTGGTTGATATAC 2270
| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2437 CTGATCCTGGTAATCAGATTCTTGAGTTGCTTTTGCGACTTGTCTCTTTGGTTGATATAC 2496
Query 2271 AAGTGTTGCCATATCTTATGAAGTCATTGGCGCAACTAATTATAAAGTTACCAAAAGAAA 2330
||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 2497 AAGTGTTGCCATATCTTATGAAGTCATTGGCACAGCTAGTTATAAAGTTACCAAAAGAAA 2556
Query 2331 GACAGAACATGGTGCTTGGTGAATTGTATGGTCAAGTGGCTGAGTCAGACGATGTGATTC 2390
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2557 GACAGAACGTTGTGCTTGGTGAATTGTATGGTCAAGTGGCTGAGTCAGACGATGTGATTC 2616
Query 2391 GCAAGCCTTCTTTGGTCTCTTGGCTACAGTCACTGAACTACTTATGTTTTAATAACCGGA 2450
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2617 GCAAGCCTTCTTTGGTCTCTTGGCTACAGTCACTGAACTACTTATGTTCTAATAACCGTA 2676
Query 2451 CTGAAGTCTCAGCTTCTGGCTCAACGATAGACACTTCGAACCAGTTGGCTGCTCGACTCT 2510
||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2677 CTGAAGTTTTAGCTTCTGGATCAACGATAGACACTTCGAACCAGTTGGCTGCTCGACTCT 2736
Query 2511 AGGGATCTCCTCATAATTTGCAAACATGTGAAATATAATTAAAGTTTGTATGACGTATAT 2570
||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||| | |||
Sbjct 2737 AGGGATCTCCTCATAGTTTACAAACATGTGAAATAGAAT-AAAGTTTGTATGACTTGTAT 2795
Query 2571 CATGGAATT 2579
|||||||||
Sbjct 2796 CATGGAATT 2804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128026038536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5