BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476540
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74000.1 | Symbols: SS3 | strictosidine synthase 3 | chr1:27... 1504 0.0
> AT1G74000.1 | Symbols: SS3 | strictosidine synthase 3 | chr1:27829142-27831431
REVERSE LENGTH=1144
Length=1144
Score = 1504 bits (814), Expect = 0.0
Identities = 957/1027 (93%), Gaps = 5/1027 (0%)
Strand=Plus/Plus
Query 1 GATGGATAACAAA-AACACAACCAGAGAAACATTATGAGGTCGtttgtctccttgatttc 59
||| ||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1 GATAGATAA-AAAGAACACAACCAAAGAAACATGATGAGGTCGTTTGTCTCGTTGATTTC 59
Query 60 ttttctccttcttctctcattttcttcatctgttttctcAGCCAAAGAG---TCATTTCA 116
| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 60 TCTTCTCCTTCTTCTCTCATTTTCTTCATCTGTTCTCTCAACCAAAAAGTCATCATTTCA 119
Query 117 AAAGCTTCCGGTGCCAGGAAACAGAACAGGCCCTGAAGCTTTCGCTTTTGATTCCACCGG 176
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAAACTTCCGGTGCCAGGAAACAGAACAGGCCCTGAAGCTTTCGCTTTTGATTCCACCGG 179
Query 177 AAAAGGATTCTACACTGGAGTCTCCGGCGGTAAAATCCTAAAATATCTTCCAAGGAAAGG 236
||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 180 AAAAGGATTCTACACCGGAGTCACCGGCGGTAAAATCCTAAAATATCTTCCAAAGAAAGG 239
Query 237 TTATGTCGATTTTGCCCAGATCACAAACTCTTCGAAGTCTTCTTTGTGCGACGGAGCACT 296
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TTATGTCGACTTTGCCCAGATCACAAACTCTTCGAAGTCTTCGTTGTGCGACGGAGCACT 299
Query 297 TGGAACTACTAACGTTGGAAAATGTGGCCGACCGGCGGGAATAGCTTTCAACAGGAAAAC 356
|||||| |||||||| | ||||||||| ||||| || |||||||| ||||||| ||||||
Sbjct 300 TGGAACCACTAACGTCGAAAAATGTGGTCGACCAGCCGGAATAGCCTTCAACACGAAAAC 359
Query 357 AGGTGATCTTTACGTCGCTGATGCTCCTTTGGGTCTCCACGTCGTTTCTCGAGGCGGCGG 416
|||||||||||||||||| |||||| | ||||||||||||||| | |||| | || ||
Sbjct 360 AGGTGATCTTTACGTCGCAGATGCTGCATTGGGTCTCCACGTCATCCCTCGCCGTGGGGG 419
Query 417 TTTGGCTAAGAAGATCGCCGACAGTGTCGACGGCAAGCCCTTCTTGTTTCTCGACGGTCT 476
||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||
Sbjct 420 TTTGGCTAAGAAGATCGCCGACAGTGTCGGCGGCAAGCCCTTTTTGTTTCTTGACGGGCT 479
Query 477 CGACGTTGATCCCACTACCGGTGTCGTCTATTTCACTTCCTTCAGCTCAACATTTGGCCC 536
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGACGTAGATCCCACTACCGGCGTCGTCTATTTCACTTCCTTCAGCTCAACATTTGGCCC 539
Query 537 TAGCGATGTTTTGAAAGCAGTGGCAACAAAAGACTCGACCGGTAAGCTCTTCAAATACGA 596
||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 540 TAGGGATGTGTTGAAAGCAGTGGCAACAAAAGACTCGACCGGTAAGTTCTTCAAATACGA 599
Query 597 TCCATCAAAAAAGGTCGTGACTGTATTGATGGAAGGTCTAAGTGGCTCAGCCGGATGTGC 656
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 600 TCCATCAAAAAAGGTCGTGACTGTATTGATGGAAGGTCTTAGCGGCTCAGCCGGATGTGC 659
Query 657 CGTTAGCTCAGATGGTTCATTCGTGCTGGTTAGTCAGTTCACAAAGAGTAACATCAAAAG 716
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 660 CGTTAGCTCAGATGGTTCATTCGTGCTGGTTGGTCAGTTCACAAAAAGTAACATCAAGAG 719
Query 717 GTATTGGATCAAAGGAGCTAAAGCTGGTTCTTTTGAAGACTTCACCAACTCGGTCTCGAG 776
|||||||||||||||| | ||||||||| ||| ||||||||||||||||||||||||||
Sbjct 720 GTATTGGATCAAAGGATCCAAAGCTGGTACTTCTGAAGACTTCACCAACTCGGTCTCGAA 779
Query 777 CCCTGACAACATCAAGAGGATCGGTTCTTCTGGAAACTTTTGGGTTGCTTCGGTCGTGAA 836
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 CCCTGACAACATCAAGAGGATCGGTTCTACTGGAAACTTTTGGGTTGCTTCGGTCGTGAA 839
Query 837 CTCAGCCACCGGACCGACAAACCCTTCGGCGGTTAAAGTCAGTTCTGATGGTAAAGTGAT 896
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 840 CTCAGCCACCGGACCGACAAACCCTTCGGCGGTTAAAGTCAGTTCTGCCGGTAAAGTGCT 899
Query 897 TCAGACCATTCCCCTAAAAGATAAGTTTGGGGATACTTTGGTTAGCGAGGTTAATGAATT 956
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 900 TCAGACCATTCCCCTAAAAGACAAGTTTGGGGATACTTTGGTTAGTGAAGTTAACGAATA 959
Query 957 CAGAGGACGGCTTTATATCGGAGCTCTTTTTGGTCCTTTTGCCGGAATTCTTAAGCTTTA 1016
|| ||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 960 CAAAGGACAGCTTTACATCGGAGCTCTTTTTGGTCCTTTCGCCGGAATTCTTAAGCTTTA 1019
Query 1017 AAGTGAA 1023
|||||||
Sbjct 1020 AAGTGAA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5