BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476541
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74010.1 | Symbols: | Calcium-dependent phosphotriesterase ... 1561 0.0
> AT1G74010.1 | Symbols: | Calcium-dependent phosphotriesterase
superfamily protein | chr1:27832158-27834113 REVERSE LENGTH=1348
Length=1348
Score = 1561 bits (845), Expect = 0.0
Identities = 980/1044 (94%), Gaps = 14/1044 (1%)
Strand=Plus/Plus
Query 1 ATTCGTGTACTAATTTTACTTTCATAGACTCAAAAATTAAGATACGATATATAATGGCGT 60
||||||||||||||||||| |||||||||| |||||||||||| || |||||||
Sbjct 51 ATTCGTGTACTAATTTTACCTTCATAGACT---TAATTAAGATACG----ATCATGGCGT 103
Query 61 CGTTTGTCTTTGTGATttctcttcttcttctctctcttTCGTCTGCTGTTTTCTCCGATG 120
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 104 CGTTTGTCTTTGTGATTTCTCTTCTTCTTCTCTCTTTTTCGTCGGCTGTTTTCTCCGATG 163
Query 121 ACGCGTCTTTCCAGAAACTTCCGGTGCCGGGA-AAGAGGTCAGGCCCTGAATCTTTCGCC 179
| || ||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 164 ATGCTTCTTTTCAGAAACTTCCGGTGCC-TGACAAGAGGTCAGGCCCTGAATCTTTCGCC 222
Query 180 TTTGATTCCACCGGCAACGGATTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTAC 239
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTTGACTCTACCGG---CGGATTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTAC 279
Query 240 GTTCCCGACAAGGGTTATGTCGATTTTGCCCAGATCACAGAATCCTCGAACTCGGCATGG 299
||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 280 GTTCCTGGGAAGGGTTATGTCGATTTTGCCCAGATCACAGATTCCTCGAACTCGGCATGG 339
Query 300 TGCAACGGAGCACTT-GGAACCGCTTTCGCAGGAAAGTGCGGTCGACCAGCGGGAATAGC 358
|||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 340 TGCAACGGAGCA-TTAGGAACCGCTTTCGCCGGAAAGTGTGGTCGACCAGCGGGAATAGC 398
Query 359 CTTAAACAGCAAAACAGGTGATCTCTATGTCGCCGATGCTCCATTGGGTCTTCATGTTAT 418
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 399 CTTAAACAGCAAAACAGGTGATCTCTATGTCGCCGATGCTCCGTTGGGTCTTCACGTTAT 458
Query 419 CCCTCCCGCCGGAGGTTTGGCCACAAAGCTCGCCGATAGTGTTGACGGAAAACCCTTCAA 478
| ||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 459 CTCTCCCGCAGGAGGTTTGGCCACAAAGCTGGCCGACAGTGTTGACGGAAAGCCTTTCAA 518
Query 479 GTTTCTAGACGGTCTTGACGTTGATCCCACTACCGGCGTCGTCTACTTCACTTCCTTCAG 538
|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 519 GTTTCTTGACGGTCTTGATGTTGATCCCACCACCGGCGTCGTCTACTTCACTTCCTTCAG 578
Query 539 CTCCAAGTTTGGTCCCCGCGAAGTGTTGATCGCAGTGGGATTAAAAGACGCGAGTGGAAA 598
||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 579 TTCCAAGTTTGGACCCCGGGAAGTGTTAATCGCAGTGGGATTAAAAGACGCGAGCGGAAA 638
Query 599 GCTCTTCAAATACGACCCAGCGACCAAAGCCGTGACTGAGTTAATGCAAGGACTAAGTGG 658
||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 639 GCTGTTCAAATACGACCCAGCGACCAAAGCCGTGACTGAGTTAATGGAAGGTCTAAGTGG 698
Query 659 TGCGGCTGGTTGCGCCGTGAGCTCAGATGGTTCGTTCGTGCTGGTTAGCGAGTTCATAAA 718
||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 699 TGCTGCTGGTTGTGCAGTGAGCTCAGATGGTTCATTCGTGCTAGTTAGCGAGTTCATAAA 758
Query 719 GAGTAACATCAAGAGATATTGGATCAAAGGACCCAAAGCTGGAACTATTGAAGACTTCTC 778
|||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 759 GAGTAACATCAAGAAATATTGGATTAAAGGGCCCAAAGCTGGAACTATTGAAGACTTCTC 818
Query 779 AAGTCTTGTCTCGAACCCAGACAACATCAGGAGGGTAGGTTCTACCGGAAATTTCTGGGT 838
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AAGTCTTGTCTCGAACCCCGACAACATCAGGAGGGTAGGTTCTACCGGAAATTTCTGGGT 878
Query 839 GGCCTCCGTCGTGAACAAGGTTGTCATGCCTACCGACCCTAAGGCGGTCAAACTAGACGC 898
||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 879 CGCCTCTGTCGTGAACAAGGTTGTTATGCCTACCGACCCTAGGGCGGTCAAACTAGACGC 938
Query 899 TAATGGAAAAGTGCTTCAGACCATTTTCCTCAAGAATGAGTTTGGGAATACTTTGCTTAG 958
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 TAATGGAAAAGTGCTCCAGACCATTTTCCTCAAGAATGAGTTTGGGAATACTTTGCTTAG 998
Query 959 TGAAGTCAACGAGTTCAACGGCCATCTTTACATCGGAACTCTTACTGGACCTTTCGCCGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TGAAGTCAACGAGTTCAACGGCCATCTTTACATCGGAACTCTTACTGGACCTTTCGCCGG 1058
Query 1019 AGTCATGAAACTTTAAATTGGTAT 1042
||||||||||||||||||||||||
Sbjct 1059 AGTCATGAAACTTTAAATTGGTAT 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5