BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476542
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74020.1 | Symbols: SS2 | strictosidine synthase 2 | chr1:27... 1615 0.0
AT1G74010.1 | Symbols: | Calcium-dependent phosphotriesterase ... 833 0.0
AT1G74000.1 | Symbols: SS3 | strictosidine synthase 3 | chr1:27... 725 0.0
> AT1G74020.1 | Symbols: SS2 | strictosidine synthase 2 | chr1:27835131-27837317
REVERSE LENGTH=1206
Length=1206
Score = 1615 bits (874), Expect = 0.0
Identities = 997/1058 (94%), Gaps = 2/1058 (0%)
Strand=Plus/Plus
Query 1 AAAGTCTCATTTGAGAATAATTGAGCGATAAAGAAACGGTATGACGTCGTTTTGCCCCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AAAGTCTCATTTGAGAATAATTGAGCGATAAAGAAACGGTATGACGTCGTTTTGCTCCAT 60
Query 61 GATTTttcttcttcttcttctctctcttTCCTCGGTGGTTTTCTCCGATGATGCGTCTTT 120
||||| |||||||||||||||||||||||| |||| ||||||||||||||| || |||||
Sbjct 61 GATTTCTCTTCTTCTTCTTCTCTCTCTTTCATCGGCGGTTTTCTCCGATGACGCTTCTTT 120
Query 121 CCAGAAACTTCCGGTGCCGGAAAGTAGGTCAGG-CCCTGAAGCTTTCGCCTTTGATTCCA 179
||||||||||||||||||||||| ||||||||| ||| ||||||||||| ||||||||||
Sbjct 121 CCAGAAACTTCCGGTGCCGGAAACTAGGTCAGGTCCC-GAAGCTTTCGCTTTTGATTCCA 179
Query 180 CCGGAAAAGGGTTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTACCTTCCCGAGA 239
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 180 CCGGTAAAGGGTTCTATACCGGTGTCTCCGGTGGTAAAATCCTCAAGTACCTCCCCGAGA 239
Query 240 CGGGTTATGTCGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGAA 299
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CGGGTTATGTTGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGTA 299
Query 300 ATATTGGAACGGCTTTAGCAGGAAGATGTGGTAGACCAGCGGGAATAGCGTTCAACGAGA 359
|||||||||||||||||| ||| | |||||| ||||||| |||||||| ||||||||||
Sbjct 300 CTATTGGAACGGCTTTAGCCGGACGCTGTGGTCGACCAGCAGGAATAGCATTCAACGAGA 359
Query 360 AAACAGGTGATCTCTACGTCGCCGATGCACCGTTGGGTCTTCACGTTGTTTCTCCCGCAG 419
||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 360 AAACAGGTGATCTTTACGTCGCCGATGCTCCGTTGGGTCTTCACGTTATTTCTCCCGCCG 419
Query 420 GTGGTTTGGCTACAAAGATCGCCGATAGTGTTGACGGAAAGCCTTTCAATTTTCTTGACG 479
||||||||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 420 GTGGTTTGGCTACGAAGATCACCGACAGTGTTGACGGAAAGCCTTTCAAGTTTCTTGACG 479
Query 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTTTACTTCACTTCCTTCAGCTCACGCTTCA 539
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTCTACTTCACTTCCTTCAGCTCACGCTTCT 539
Query 540 CCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAAT 599
Query 600 ACGACCCATCAACCAAAGTTGTGACCGTATTGATGGAAGGGCTAAGTGGTTCAGCCGGGT 659
|||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 600 ACGACCCATCGACCAAAGTCGTGACTGTACTGATGGAAGGGCTAAGTGGTTCAGCCGGGT 659
Query 660 GTGCAGTGAGCTCAGATGGTTCATTCGTGTTGGTTAGTCAGTTCACAAAGAGTAACATCA 719
|||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||
Sbjct 660 GTGCAGTGAGCTCAGATGGTTCGTTTGTGCTGGTTAGTCAGTTCACAAAAAGTAACATCA 719
Query 720 AGAGGTATTGGATCAAGGGACCAAAAGCTGGTTCTTCTGAAGACTTCACCAACTCGGTCT 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 720 AGAGGTATTGGATCAAGGGACCCAAAGCTGGTTCTTCTGAAGACTTCACCAACTCAGTCT 779
Query 780 CAAACCCTGACAACATCAAAAGAATTGGTTCTACTGGAAATTTTTGGGTCGCTTCCGTGG 839
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 780 CAAACCCTGACAATATCAAAAGAATTGGCTCTACTGGAAACTTTTGGGTCGCTTCAGTGG 839
Query 840 TGAACAAGATCATCGTGCCTACGAACCCATCAGCAGTCAAAGTAAACTCTGATGGTGAAG 899
|||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct 840 TGAACAAGATCATCGTACCTACGAACCCATCAGCAGTCAAAGTTAACTCTAATGGTGAAG 899
Query 900 TGCTTCAGACAATACCTCTCAAAGATAAATTTGGAGACACTTTGCTTAGTGAAGTCAACG 959
| ||||| ||||| ||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 900 TTCTTCAAACAATTCCTCTCAAAGATAAATTTGGAGACACTCTGCTCAGCGAAGTCAACG 959
Query 960 AATTCGAGGGCAATCTATATATCGGAACTCTCACAGGACCATTTGCTGGAATTCTTAAGC 1019
|||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 960 AATTCGAGGGCAATTTATATATAGGAACTCTCACCGGACCATTTGCTGGAATTCTTAAGC 1019
Query 1020 TCGAAAATGGTTCTTGCCCTGCCACTTAGATCTCTTAT 1057
||||||| |||||||| |||||||||||||||||||||
Sbjct 1020 TCGAAAAGGGTTCTTGTCCTGCCACTTAGATCTCTTAT 1057
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1055 TATATATGAGCTTTTTATTTATTTCTGAAT 1084
||||||||||||||||||||||||||||||
Sbjct 1089 TATATATGAGCTTTTTATTTATTTCTGAAT 1118
> AT1G74010.1 | Symbols: | Calcium-dependent phosphotriesterase
superfamily protein | chr1:27832158-27834113 REVERSE LENGTH=1348
Length=1348
Score = 833 bits (451), Expect = 0.0
Identities = 800/964 (83%), Gaps = 42/964 (4%)
Strand=Plus/Plus
Query 65 TttcttcttcttcttctctctcttTCCTCGG-TGGTTTTCTCCGATGATGCGTCTTTCCA 123
|||| |||||||||||||||| |||| |||| | ||||||||||||||||| ||||| ||
Sbjct 119 TTTC-TCTTCTTCTTCTCTCTTTTTCGTCGGCT-GTTTTCTCCGATGATGCTTCTTTTCA 176
Query 124 GAAACTTCCGGTGCCGGA-AAGTAGGTCAGGCCCTGAAGCTTTCGCCTTTGATTCCACCG 182
||||||||||||||| || ||| ||||||||||||||| ||||||||||||| || ||||
Sbjct 177 GAAACTTCCGGTGCCTGACAAG-AGGTCAGGCCCTGAATCTTTCGCCTTTGACTCTACCG 235
Query 183 GAAAAGGGTTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTACCTTCCCGAGACGG 242
| || ||||||||||||||||||||||||||||||||||||||| |||| | || ||
Sbjct 236 G---CGGATTCTACACCGGAGTCTCCGGTGGTAAAATCCTCAAGTACGTTCCTGGGAAGG 292
Query 243 GTTATGTCGACTTTGCCCAGATCACTGAATCCTCGAACTCTTCATGGTGCGATGGAAATA 302
|||||||||| |||||||||||||| || ||||||||||| |||||||| | ||| |
Sbjct 293 GTTATGTCGATTTTGCCCAGATCACAGATTCCTCGAACTCGGCATGGTGCAACGGAGC-A 351
Query 303 TT-GGAACGGCTTTAGCAGGAA-GATGTGGTAGACCAGCGGGAATAGCGTTCAACGAG-A 359
|| ||||| ||||| || |||| | |||||| |||||||||||||||| || ||| || |
Sbjct 352 TTAGGAACCGCTTTCGCCGGAAAG-TGTGGTCGACCAGCGGGAATAGCCTTAAAC-AGCA 409
Query 360 AAACAGGTGATCTCTACGTCGCCGATGCACCGTTGGGTCTTCACGTTGTTTCTCCCGCAG 419
|||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 410 AAACAGGTGATCTCTATGTCGCCGATGCTCCGTTGGGTCTTCACGTTATCTCTCCCGCAG 469
Query 420 GTGGTTTGGCTACAAAGATCGCCGATAGTGTTGACGGAAAGCCTTTCAATTTTCTTGACG 479
| |||||||| |||||| | ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 470 GAGGTTTGGCCACAAAGCTGGCCGACAGTGTTGACGGAAAGCCTTTCAAGTTTCTTGACG 529
Query 480 GTCTTGACGTTGATCCCACTACTGGTGTCGTTTACTTCACTTCCTTCAGCTC-ACGCTTC 538
||||||| ||||||||||| || || ||||| ||||||||||||||||| || | | ||
Sbjct 530 GTCTTGATGTTGATCCCACCACCGGCGTCGTCTACTTCACTTCCTTCAGTTCCAAGTTTG 589
Query 539 -ACCCCAATCCAAGTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAA 597
||||| ||||||| || ||| |||| ||||| ||||||| ||||||||| | |||
Sbjct 590 GACCCCGGG--AAGTGTTAATCGCAGTGGGATTAAAAGACGCGAGCGGAAAGCTGTTCAA 647
Query 598 ATACGACCCATCAACCAAAGTTGTGACCGTA-TTGATGGAAGGGCTAAGTGGTTCAGCCG 656
|||||||||| | ||||||| ||||| | | || |||||||| ||||||||| | || |
Sbjct 648 ATACGACCCAGCGACCAAAGCCGTGACTG-AGTTAATGGAAGGTCTAAGTGGTGCTGCTG 706
Query 657 GGTGTGCAGTGAGCTCAGATGGTTCATTCGTGTTGGTTAGTC-AGTTCACAAAGAGTAAC 715
| |||||||||||||||||||||||||||||| | ||||| | |||||| ||||||||||
Sbjct 707 GTTGTGCAGTGAGCTCAGATGGTTCATTCGTGCTAGTTAG-CGAGTTCATAAAGAGTAAC 765
Query 716 ATCAAGAGGTATTGGATCAA-GGGACCAAAAGCTGGTTCT-TCTGAAGACTTCACCAACT 773
||||||| |||||||| || ||| ||||| ||||| || | |||||||||| | || |
Sbjct 766 ATCAAGAAATATTGGATTAAAGGGCCCAAA-GCTGGAACTAT-TGAAGACTTCTC-AAGT 822
Query 774 CG-GTCTCAAACCCTGACAACATCAAAAGAATTGGTTCTACTGGAAATTTTTGGGTCGCT 832
| ||||| ||||| |||||||||| || | |||||||| |||||||| ||||||||
Sbjct 823 CTTGTCTCGAACCCCGACAACATCAGGAGGGTAGGTTCTACCGGAAATTTCTGGGTCGCC 882
Query 833 TCCGTGGTGAACAAGATCATCGTGCCTAC-GAACCCATCAG--CAGTCAAAGTAAACTCT 889
|| || ||||||||| | | ||||||| || ||| | || | |||||| || || ||
Sbjct 883 TCTGTCGTGAACAAGGTTGTTATGCCTACCGA-CCC-T-AGGGCGGTCAAACTAGACGCT 939
Query 890 GATGGTGAAGTGCTTCAGACAATACCTC-TCAAAGA-TAAATTTGGAGAC-ACTTTGCTT 946
|||| ||||||| ||||| || || |||| || | | ||||| || |||||||||
Sbjct 940 AATGGAAAAGTGCTCCAGACCATTT-TCCTCAA-GAATGAGTTTGG-GAATACTTTGCTT 996
Query 947 AGTGAAGTCAACGAATTCGAGGGCAATCTATATATCGGAACTCTCACAGGACCATTT-GC 1005
|||||||||||||| ||| | ||| |||| || ||||||||||| || ||||| ||| ||
Sbjct 997 AGTGAAGTCAACGAGTTCAACGGCCATCTTTACATCGGAACTCTTACTGGACC-TTTCGC 1055
Query 1006 TGGA 1009
|||
Sbjct 1056 CGGA 1059
> AT1G74000.1 | Symbols: SS3 | strictosidine synthase 3 | chr1:27829142-27831431
REVERSE LENGTH=1144
Length=1144
Score = 725 bits (392), Expect = 0.0
Identities = 816/1016 (80%), Gaps = 47/1016 (5%)
Strand=Plus/Plus
Query 30 AAAGAAACGGT-ATGACGTCGTTTTG-CCCCATGATTTttcttcttcttcttctctc-tc 86
|||||||| | |||| |||| |||| | | |||||| |||||| ||||||||||| |
Sbjct 23 AAAGAAAC-ATGATGAGGTCG-TTTGTCTCGTTGATTTCTCTTCTCCTTCTTCTCTCAT- 79
Query 87 ttTCCTCGGT-GGTTTTCTC--CGATGATG-CGTC-TTTCCAGAAACTTCCGGTGCC-GG 140
|||| || | ||| |||| | | | | | || ||| || |||||||||||||| ||
Sbjct 80 TTTCTTC-ATCTGTTCTCTCAACCAAAAAGTCATCATTT-CAAAAACTTCCGGTGCCAGG 137
Query 141 AAAGTAGGTCAGGCCCTGAAGCTTTCGCCTTTGATTCCACCGGAAAAGGGTTCTACACCG 200
||| || ||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 138 AAA-CAGAACAGGCCCTGAAGCTTTCGCTTTTGATTCCACCGGAAAAGGATTCTACACCG 196
Query 201 GAGTCTCCGGTGGTAAAATCCTCAAGTACCTTCCCGAGACGGGTTATGTCGACTTTGCCC 260
||||| |||| ||||||||||| || || ||||| ||| |||||||||||||||||||
Sbjct 197 GAGTCACCGGCGGTAAAATCCTAAAATATCTTCCAAAGAAAGGTTATGTCGACTTTGCCC 256
Query 261 AGATCACTGAA-TCCTCGAACTCTTCATGGTGCGATGGAAATA-TTGGAACGGCTTTA-G 317
||||||| || || ||||| ||||| | |||||| || | | ||||||| | | | |
Sbjct 257 AGATCAC-AAACTCTTCGAAGTCTTCGTTGTGCGACGG-AGCACTTGGAACCAC-TAACG 313
Query 318 -CAGGAAGATGTGGTAGACCAGCGGGAATAGCGTTCAACGA-GAAAACAGGTGATCTCTA 375
| | || ||||||| ||||||| |||||||| |||||| | ||||||||||||||| ||
Sbjct 314 TC-GAAAAATGTGGTCGACCAGCCGGAATAGCCTTCAAC-ACGAAAACAGGTGATCTTTA 371
Query 376 CGTCGCCGATGCACCGTTGGGTCTTCACGTTGTTTCTC-CCGCAGGTGGTTTGGCTACA- 433
|||||| ||||| | |||||||| ||||| | ||| ||| || |||||||||| |
Sbjct 372 CGTCGCAGATGCTGCATTGGGTCTCCACGTCATCCCTCGCCG-TGGGGGTTTGGCTA-AG 429
Query 434 AAGATCGCCGATAGTGTTGACGGAAAG-CCTTTCAAT-TTTCTTGACGGTCTTGACGTTG 491
||||||||||| ||||| | ||| ||| ||||| | ||||||||||| |||||||| |
Sbjct 430 AAGATCGCCGACAGTGTCGGCGGCAAGCCCTTT--TTGTTTCTTGACGGGCTTGACGTAG 487
Query 492 ATCCCACTACTGGTGTCGTTTACTTCACTTCCTTCAGCTC-ACGCTTCACCCCAATCCAA 550
|||||||||| || ||||| || ||||||||||||||||| || || ||| | |
Sbjct 488 ATCCCACTACCGGCGTCGTCTATTTCACTTCCTTCAGCTCAAC-ATTTGGCCCTAGGGAT 546
Query 551 GTGTTGATTGCATTGGGGTTAAAGGACGCGACCGGAAAGCTCTACAAATACGACCCATCA 610
||||||| ||| ||| ||| ||| ||||||| ||| ||| ||||||||| ||||||
Sbjct 547 GTGTTGAAAGCAGTGGCAACAAAAGACTCGACCGGTAAGTTCTTCAAATACGATCCATCA 606
Query 611 ACCAAA-GTTGTGACCGTATTGATGGAAGGGCTAAGTGGTTCAGCCGGGTGTGCAGTGAG 669
| ||| || ||||| |||||||||||||| || || || |||||||| ||||| || ||
Sbjct 607 A-AAAAGGTCGTGACTGTATTGATGGAAGGTCTTAGCGGCTCAGCCGGATGTGCCGTTAG 665
Query 670 CTCAGATGGTTCATTCGTGTTGGTTAGTCAGTTCACAAAGAGTAACATCAAGAGGTATTG 729
||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 666 CTCAGATGGTTCATTCGTGCTGGTTGGTCAGTTCACAAAAAGTAACATCAAGAGGTATTG 725
Query 730 GATCAAGGGA-CCAAAAGCTGGTTCTTCTGAAGACTTCACCAACTCGGTCTCAAACCCTG 788
|||||| ||| || ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 726 GATCAAAGGATCC-AAAGCTGGTACTTCTGAAGACTTCACCAACTCGGTCTCGAACCCTG 784
Query 789 ACAACATCAAAAGAATTGGTTCTACTGGAAATTTTTGGGTCGCTTCCGTGGTGAACA-AG 847
|||||||||| || || |||||||||||||| |||||||| ||||| || |||||| ||
Sbjct 785 ACAACATCAAGAGGATCGGTTCTACTGGAAACTTTTGGGTTGCTTCGGTCGTGAACTCAG 844
Query 848 ATCATCGTG-CCTACGAACCCATCAGCAGTCAAAGTAAACTCTGATGGTGAAGTGCTTCA 906
|| || | || || ||||| || || || ||||| | |||| ||| ||||||||||
Sbjct 845 C-CACCG-GACCGACAAACCCTTCGGCGGTTAAAGTCAGTTCTGCCGGTAAAGTGCTTCA 902
Query 907 GACAATACCTCTCAAAGATAAATTTGGAGACACTTTGCTTAGTGAAGTCAACGAATTCGA 966
||| || || || ||||| || ||||| || |||||| |||||||||| ||||||| | |
Sbjct 903 GACCATTCCCCTAAAAGACAAGTTTGGGGATACTTTGGTTAGTGAAGTTAACGAATACAA 962
Query 967 GGG-CAATCTATATATCGGAACTCTCACAGGACCATTT-GCTGGAATTCTTAAGCT 1020
|| || || || |||||| |||| || || ||| || ||||||||||||||
Sbjct 963 AGGACAG-CTTTACATCGGAGCTCTTTTTGGTCC-TTTCGCCGGAATTCTTAAGCT 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5