BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476544
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate ... 1530 0.0
AT1G18500.1 | Symbols: MAML-4, IPMS1 | methylthioalkylmalate sy... 865 0.0
AT3G32445.1 | Symbols: | pseudogene, putative ribonucleotide r... 110 8e-23
> AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate
synthase 1 | chr1:27842171-27845776 FORWARD LENGTH=2193
Length=2193
Score = 1530 bits (828), Expect = 0.0
Identities = 987/1061 (93%), Gaps = 21/1061 (2%)
Strand=Plus/Plus
Query 1 CCGTCGCCGCCGCCGCCACACTATCATCTCTCTC--G---AT--TTTTCCATGGCAATGG 53
|||||||||||||||||||||||||||||||||| | | ||||||| ||||||||
Sbjct 32 CCGTCGCCGCCGCCGCCACACTATCATCTCTCTCAGGTTTTTGATTTTCCACGGCAATGG 91
Query 54 AGTCTTCGATTCTCAAAAGCCCTAATCTCTCTTCACCATCGTTCGGTGTACCTTCAATTC 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 AGTCTTCGATTCTCAAAAGCCCTAATCTCTCTTCACCATCGTTCGGTGTACCTTCAATTC 151
Query 114 CCGCATTATGCTCCTCCTCCACGTCACCAATTTCATCTCTTCTTCTCCGATCACTCAACC 173
|||| |||| |||||||||||| |||||| |||||||||||| ||||||||||| ||||
Sbjct 152 CCGCCTTATCCTCCTCCTCCACCTCACCATTTTCATCTCTTCATCTCCGATCACAGAACC 211
Query 174 ACCGT---A-----C-T---GCCGCCGGAAATTTTCGTATCTCGTGCTCACTCTCCGATT 221
||||| | | | |||||||||| || ||| |||||| || ||||||| ||
Sbjct 212 ACCGTACCATCTCTCTTACCACCGCCGGAAAATTCCGTGTCTCGTATTCTCTCTCCGCTT 271
Query 222 CTTCTCCTCTACCATCTCATTCTCCTCGCCGTCGTCCCGATTACATCCCTAATCGCATTT 281
|||| ||||||||| ||||| ||||||||||||||||| ||||||||||||| || || |
Sbjct 272 CTTCACCTCTACCACCTCATGCTCCTCGCCGTCGTCCCAATTACATCCCTAACCGTATAT 331
Query 282 CCGATCCCAATTACGTTC-GAATCTTCGACACGACTCTCCGAGACGGTGAACAGTCTCCC 340
||||||||||||||| || |||||||||| || |||||||||||||||||||||||||||
Sbjct 332 CCGATCCCAATTACG-TCAGAATCTTCGATACAACTCTCCGAGACGGTGAACAGTCTCCC 390
Query 341 GGAGCTACACTAACCTCCAAGGAAAAGCTCGATATCGCTCGTCAATTAGCCAAGCTCGGA 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 GGAGCTACACTAACCTCCAAGGAAAAGCTCGATATCGCTCGTCAATTAGCCAAGCTCGGA 450
Query 401 GTCGACATCATCGAAGCTGGATTTCCTGCTGCTTCAAAAGACGATTTCGAAGCTGTGAAA 460
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 451 GTCGACATCATCGAAGCTGGATTTCCCGCTGCTTCAAAAGACGATTTCGAAGCTGTTAAA 510
Query 461 ACCATAGCAGAGACTGTTGGCAATACCGTCGACGAAAATGGTTATGTACCTGTAATCTGT 520
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 511 ACCATAGCTGAGACTGTTGGCAATACCGTCGACGAAAATGGCTATGTCCCTGTAATCTGT 570
Query 521 GGCCTCTCGAGATGTAACAAGAAGGATATTGAGACTGCTTGGGAGGCTGTGAAGTACGCT 580
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 571 GGTCTCTCGAGATGTAACAAGAAGGATATTGAGACGGCTTGGGAAGCTGTGAAGTACGCT 630
Query 581 AAACGTCCTAGAATCCATACGTTTATTGCCACTAGTGATATTCATTTGAAGTATAAGCTG 640
|| || || |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 631 AAGCGGCCAAGAATCCATACGTTTATTGCCACTAGTGATATTCATCTGAAGTATAAGTTG 690
Query 641 AAGAAGAGTAAAGAAGAAGTTATTGAGATCGCAAGAAATATGGTTAGATTCGCCAGAAGC 700
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 691 AAGAAGAGTAAAGAAGAAGTTATTGAGATCGCTAGGAACATGGTTAGATTCGCCAGAAGC 750
Query 701 TTGAGATGTGAAGATGTTGAATTTAGTCCAGAAGATGCCGGAAGATCGGAGAGAGAGTAC 760
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTGGGATGTGAAGATGTTGAATTTAGTCCAGAAGATGCCGGAAGATCGGAGAGAGAGTAC 810
Query 761 TTATACGAGATTCTTGGTGAAGTGATAAAAGCTGGAGCAACAACTCTCAACATACCTGAC 820
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 811 TTATACGAGATTCTTGGTGAAGTGATCAAAGCTGGAGCAACCACTCTTAACATACCTGAC 870
Query 821 ACTGTTGGTATAACCTTGCCTAGTGAGTTTGGTCAGTTGATTGCTGATATTAAAACCAAT 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 871 ACTGTTGGTATAACCTTGCCTAGTGAGTTTGGTCAGTTGATTGCTGATATTAAAGCTAAT 930
Query 881 ACTCGTGGGATCCAAAATGTTATAAGCTCTACACATTGTCAGAATGATCTTGGACTCTCA 940
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 931 ACTCCTGGGATCCAAAATGTTATAATCTCTACACATTGTCAGAATGATCTTGGACTCTCC 990
Query 941 ACCGCCAATACTTTATCTGGTGCACATTCGGGCGCGAGGCAAGTGGAAGTGACTATCAAT 1000
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ACCGCCAACACTTTATCTGGTGCACATTCGGGCGCGAGGCAAGTGGAAGTGACTATCAAT 1050
Query 1001 GGAATTGGCGAAAGAGCTGGAAACGCTTCATTAGAAGAGGT 1041
|||||||||||||||||||||||||||||||| ||||||||
Sbjct 1051 GGAATTGGCGAAAGAGCTGGAAACGCTTCATTGGAAGAGGT 1091
Score = 1399 bits (757), Expect = 0.0
Identities = 872/924 (94%), Gaps = 21/924 (2%)
Strand=Plus/Plus
Query 1214 GATGGAATGCTGAAGCACAAGGGTACCTATGAAATTATGTCCCCCGAAGAGATTGGACTT 1273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1270 GATGGAATGCTGAAGCACAAGGGTACCTATGAAATTATGTCCCCCGAAGAGATTGGGCTT 1329
Query 1274 CAGCGATCAAATGAAGCTGGCATTGTGTTGGGGAAGCTTAGTGGGCGTCACGCATTGAGA 1333
||||||||||||| |||||||| ||| |||| ||||||||||||||||||||| ||| |
Sbjct 1330 GAGCGATCAAATGATGCTGGCATCGTGCTGGGAAAGCTTAGTGGGCGTCACGCACTGAAA 1389
Query 1334 GACCGTTTAAATGAGCTCGGTTATGTCCTGGATGATGGACAGCTAAGCAACCTTTTTTGG 1393
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1390 GACCGTTTAAATGAGCTCGGTTATGTCCTGGATGATGGGCAGCTAAGCAACCTTTTCTGG 1449
Query 1394 CGTTTCAAAGCTGTGGCAGAGCaaaaaaaGAGAGTTACCGATGCTGACTTAATAGCTTTA 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 CGTTTCAAAGCTGTGGCAGAGCAAAAAAAGAGAGTTACCGATGCTGACTTAATAGCTTTA 1509
Query 1454 GTCTCTGATGAAGTATTTCAGCCAGAGGCTGTGTGGAAACTCCTGGACATGCAGATAACT 1513
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1510 GTATCTGATGAAGTGTTTCAGCCAGAGGCTGTCTGGAAACTCCTGGACATGCAGATAACT 1569
Query 1514 TGTGGAACTCTCGGTCTCTCAACATCAACTGTAAAACTTGCCGACTCCGATGGCAAAGAG 1573
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1570 TGTGGAACTCTCGGTCTCTCAACATCTACTGTAAAACTTGCTGACTCCGATGGCAAAGAG 1629
Query 1574 CATGTAGCTTGTTCTGTTGGAACCGGACCTGTAGATGCAGCTTACAAGGCAGTTGATCTT 1633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 CATGTAGCTTGTTCTGTTGGAACCGGACCTGTAGATGCAGCTTACAAGGCAGTTGATCTT 1689
Query 1634 ATCGTAAAGGAACCTGCGACTCTACTTGAGTACTCGATGAATGCAGTAACAGAAGGCATT 1693
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1690 ATCGTTAAGGAACCTGCGACTCTGCTTGAGTACTCGATGAATGCAGTAACAGAAGGCATT 1749
Query 1694 GATGCTATTGCAACCACACGGGTTCTAATCCGCGGAGACAACAACTACTCATCAACAAAC 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 GATGCTATTGCAACCACACGGGTTCTAATCCGCGGAGACAACAACTACTCATCAACAAAC 1809
Query 1754 GCGGTAACCGGTGAATCTGTTGAAAGAACTTTTAGTGGAACCGGAGCAGGAATGGACATT 1813
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 GCGGTAACGGGTGAATCTGTTGAAAGAACTTTTAGTGGAACCGGAGCAGGAATGGACATT 1869
Query 1814 GTGGTGTCGAGCGTTAAAGCTTATGTTGGAGCTTTGAACAAAATGTTGGGTTTCAAAGAA 1873
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1870 GTTGTGTCGAGCGTTAAAGCTTATGTTGGAGCTTTGAACAAAATGTTGGGTTTCAAAGAA 1929
Query 1874 CATTCCTCCACTTTAAGTAAAACCCCTTTGGAGACCAAC-AATGTCCCTGCCTGAAGAAA 1932
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1930 CACACCTCCACTTTAAGTAAAACCCCTTTGGAGACCAACGAA-GTCCCTGCCTGAAGAAA 1988
Query 1933 ATCTTACCTGCAAATCTCAGAGATCAA-TGACAATTTAGATGAGTAAAAGTCTAAAAGAT 1991
||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 1989 ATCTTACCTGCAAATCTCAGAGATCAAATCACAATTTAGATGAGTAAACGTCTAAAAGAT 2048
Query 1992 TTCTAATTTTTGTTACCGTTAAAGAAATGGTATCGAATGTATAAAAAGAATATGAGTTTT 2051
|| || ||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 2049 TTTTATTTTTTGTTACCGTTAT-----TG-T-T----TGTATAAAAAGAATATGAGTTTT 2097
Query 2052 GGTTTGCTGAAATAACTATAACATAAAATC-GAGTATTTGGTTAAA-CATTGAAACATGC 2109
||||| || |||||||||| | |||||| | ||||||||||||||| ||||||||||
Sbjct 2098 GGTTTACTAAAATAACTATGATATAAAA-CAGAGTATTTGGTTAAAACATTGAAACA--- 2153
Query 2110 AAGAACAACTTTTCTATAAATAGT 2133
| |||||| |||||||||||||||
Sbjct 2154 A-GAACAAATTTTCTATAAATAGT 2176
Score = 250 bits (135), Expect = 4e-65
Identities = 137/138 (99%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1077 TTGTCATGGCCATAAAATGCCGTGGAGATCATGTCTTAGGAGGCCTATTTACTGGAATTG 1136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1091 TTGTCATGGCCATAAAATGCCGTGGAGATCATGTCTTAGGAGGCCTATTTACTGGAATCG 1150
Query 1137 ATACCCGGCACATTGTTATGACAAGCAAGATGGTTGAGGAGTACACTGGTATGCAAACGC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 ATACCCGGCACATTGTTATGACAAGCAAGATGGTTGAGGAGTACACTGGTATGCAAACGC 1210
Query 1197 AGCCCCATAAGGCTATTG 1214
||||||||||||||||||
Sbjct 1211 AGCCCCATAAGGCTATTG 1228
> AT1G18500.1 | Symbols: MAML-4, IPMS1 | methylthioalkylmalate
synthase-like 4 | chr1:6369347-6373025 FORWARD LENGTH=2060
Length=2060
Score = 865 bits (468), Expect = 0.0
Identities = 725/851 (85%), Gaps = 9/851 (1%)
Strand=Plus/Plus
Query 197 CGTATCTCGTGCTCACTCTCCGATTCTTCTCCTCTACCATCTCATTCTCCTCGCCGT--- 253
||| |||| |||||| |||| ||| ||||||| |||||| |||| |||||||||||
Sbjct 163 CGTCTCTCATGCTCAATCTCAGATCCTTCTCCACTACCACCTCACACTCCTCGCCGTCCC 222
Query 254 CGTCCCGATTACATCCCTAATCGCATTTCCGATCCCAATTACGTTCGAATCTTCGACACG 313
||||| || |||||||| || |||||||||||||| || ||||| || ||||||| ||
Sbjct 223 CGTCCTGAATACATCCCCAACCGCATTTCCGATCCAAACTACGTCCGCGTCTTCGATACT 282
Query 314 ACTCTCCGAGACGGTGAACAGTCTCCCGGAGCTACACTAACCTCCAAGGAAAAGCTCGAT 373
|||||||| ||||||||||| ||||| ||||||||||| || ||||||||||| || ||
Sbjct 283 ACTCTCCGTGACGGTGAACAATCTCCAGGAGCTACACTTACTTCCAAGGAAAAACTTGAC 342
Query 374 ATCGCTCGTCAATTAGCCAAGCTCGGAGTCGACATCATCGAAGCTGGATTTCCTGCTGCT 433
||||||||||| |||| || || || || ||||||||||| ||||| ||||||||||||
Sbjct 343 ATCGCTCGTCAGCTAGCTAAACTTGGTGTTGACATCATCGAGGCTGGGTTTCCTGCTGCT 402
Query 434 TCAAAAGACGATTTCGAAGCTGTGAAAACCATAGCAGAGACTGTTGGCAATACCGTCGAC 493
|| || || ||||| ||||| || || || ||||| || || ||||| || || || ||
Sbjct 403 TCCAAGGATGATTTTGAAGCGGTTAAGACTATAGCTGAAACAGTTGGAAACACTGTTGAT 462
Query 494 GAAAATGGTTATGTACCTGTAATCTGTGGCCTCTCGAGATGTAACAAGAAGGATATTGAG 553
|| ||||||||||| ||||| |||||||| ||||| ||||| || |||||||||||||||
Sbjct 463 GAGAATGGTTATGTTCCTGTTATCTGTGGACTCTCTAGATGCAATAAGAAGGATATTGAG 522
Query 554 ACTGCTTGGGAGGCTGTGAAGTACGCTAAACGTCCTAGAATCCATACGTTTATTGCCACT 613
| |||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || |||
Sbjct 523 AGAGCTTGGGATGCTGTGAAATACGCTAAACGGCCTAGGATTCATACTTTTATAGCTACT 582
Query 614 AGTGATATTCATTTGAAGTATAAGCTGAAGAAGAGTAAAGAAGAAGTTATTGAGATCGCA 673
|||||||| |||||| ||||||| || ||||| | |||| ||| || || || |||||
Sbjct 583 AGTGATATACATTTGGAGTATAAACTAAAGAAAACCAAAGCAGAGGTCATCGAAATCGCT 642
Query 674 AGAAATATGGTTAGATTCGCCAGAAGCTTGAGATGTGAAGATGTTGAATTTAGTCCAGAA 733
|| | ||||||||||||||| || |||||| | || ||||||||||| || |||||||||
Sbjct 643 AGGAGTATGGTTAGATTCGCGAGGAGCTTGGGGTGCGAAGATGTTGAGTTCAGTCCAGAA 702
Query 734 GATGCCGGAAGATCGGAGAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCT 793
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GATGCAGGAAGATCGGAGAGAGAGTACTTATACGAGATTCTTGGTGAAGTGATAAAAGCA 762
Query 794 GGAGCAACAACTCTCAACATACCTGACACTGTTGGTATAACCTTGCCTAGTGAGTTTGGT 853
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 763 GGAGCAACAACTCTCAACATACCTGATACTGTTGGTATAACTTTGCCTAGTGAGTTTGGT 822
Query 854 CAGTTGATTGCTGATATTAAAA-CCAATACTC-GTGGGATCCAAAATGTTATAAGCTCTA 911
|| ||||| ||||| ||||| ||||||||| | ||||| |||||||| | | ||| |
Sbjct 823 CAACTGATTACTGAT-TTAAAGGCCAATACTCCG-GGGATTGAAAATGTTGTCATCTCAA 880
Query 912 CACATTGTCAGAATGATCTTGGACTCTCAACCGCCAATACTTTATCTGGTGCACATTCGG 971
|||||||||||||||||||||||||||| || ||||| ||||||||||| |||||| | |
Sbjct 881 CACATTGTCAGAATGATCTTGGACTCTCTACGGCCAACACTTTATCTGGGGCACATGCAG 940
Query 972 GCGCGAGGCA-AGTGGAAGTGACTATCAATGGAATTGGCGAAAGAGCTGGAAACGCTTCA 1030
| |||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 941 GTGCGAGGCAGA-TGGAAGTGACGATCAATGGAATTGGTGAAAGAGCTGGAAACGCTTCA 999
Query 1031 TTAGAAGAGGT 1041
| ||||||||
Sbjct 1000 CTGGAAGAGGT 1010
Score = 758 bits (410), Expect = 0.0
Identities = 587/674 (87%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 1214 GATGGAATGCTGAAGCACAAGGGTACCTATGAAATTATGTCCCCCGAAGAGATTGGACTT 1273
|||||||||||||| ||||||||||| ||||||||||| | |||||||| |||||||||
Sbjct 1189 GATGGAATGCTGAAACACAAGGGTACATATGAAATTATATGTCCCGAAGAAATTGGACTT 1248
Query 1274 CAGCGATCAAATGAAGCTGGCATTGTGTTGGGGAAGCTTAGTGGGCGTCACGCATTGAGA 1333
| ||||||||||| ||||||||||| ||||||||||||||||||||||| || ||| |
Sbjct 1249 GAACGATCAAATGATGCTGGCATTGTCTTGGGGAAGCTTAGTGGGCGTCATGCGCTGAAA 1308
Query 1334 GACCGTTTAAATGAGCTCGGTTATGTCCTGGATGATGGACAGCTAAGCAACC-TTTTTTG 1392
|||||||| | |||||| |||||| | ||||||| ||||||||| ||| |||| ||
Sbjct 1309 GACCGTTTGACTGAGCTTGGTTATCAATTAGATGATGAACAGCTAAG-TACCATTTTCTG 1367
Query 1393 GCGTTTCAAAGCTGTGGCAGAGCaaaaaaaGAGAGTTACCGATGCTGACTTAATAGCTTT 1452
||| |||||| | ||||| ||||| |||||||||||||| ||||| ||| ||||||||||
Sbjct 1368 GCGCTTCAAAACCGTGGCTGAGCAGAAAAAGAGAGTTACTGATGCGGACATAATAGCTTT 1427
Query 1453 AGTCTCTGATGAAGTATTT-CAGCCAGAGGCTGTGTGGAAACTCCTGGACATGCAGATAA 1511
||| ||||||||||| ||| |||||||| || |||||||||||||||||||| |||||||
Sbjct 1428 AGTATCTGATGAAGT-TTTCCAGCCAGAAGCCGTGTGGAAACTCCTGGACATTCAGATAA 1486
Query 1512 CTTGTGGAACTCTCGGTCTCTCAACATCAACTGTAAAACTTGCCGACTCCGATGGCAAAG 1571
|||||||||||||||| || |||||| |||||||||||||||| ||| | ||||||||||
Sbjct 1487 CTTGTGGAACTCTCGGGCTTTCAACAGCAACTGTAAAACTTGCTGACGCTGATGGCAAAG 1546
Query 1572 AGCATGTAGCTTGTTCTGTTGGAACCGGACCTGTAGATGCAGCTTACAAGGCAGTTGATC 1631
| ||||| ||||||||| ||||||| || ||||| ||| |||||||||||||||| ||||
Sbjct 1547 AACATGTCGCTTGTTCTATTGGAACTGGGCCTGTGGATTCAGCTTACAAGGCAGTAGATC 1606
Query 1632 TTATCGTAAAGGAACCTGCGACTCTACTTGAGTACTCGATGAATGCAGTAACAGAAGGCA 1691
|||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1607 TTATCGTAAAGGAACCGGCTACTCTGCTTGAGTACTCAATGAATGCAGTAACAGAAGGCA 1666
Query 1692 TTGATGCTATTGCAACCACACGGGTTCTAATCCGCGG-AGACAACAACTACTCATCAACA 1750
||||||| || ||||||||| | ||||| ||||| || || |||||| |||||||| |||
Sbjct 1667 TTGATGCCATCGCAACCACAAGAGTTCTTATCCGTGGAAG-CAACAAATACTCATCTACA 1725
Query 1751 AACGCGGTAACCGGTGAATCTGTTGAAAGAACTTTTAGTGGAACCGGAGCAGGAATGGAC 1810
||||| |||| |||||| ||| ||||||| ||||||||||| ||||||||||||||
Sbjct 1726 AACGCAATAACTGGTGAAGAGGTTCAAAGAACCTTTAGTGGAACTGGAGCAGGAATGGAT 1785
Query 1811 ATTGTGGTGTCGAGCGTTAAAGCTTATGTTGGAGCTTTGAACAAAATGTTGGGTTTCAAA 1870
||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1786 ATTGTGGTGTCAAGCGTCAAAGCTTATGTTGGAGCTTTGAACAAAATGATGGACTTCAAA 1845
Query 1871 GAACATTCCTCCAC 1884
||| | ||| ||||
Sbjct 1846 GAAAACTCCGCCAC 1859
Score = 195 bits (105), Expect = 2e-48
Identities = 127/138 (92%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1077 TTGTCATGGCCATAAAATGCCGTGGAGATCATGTCTTAGGAGGCCTATTTACTGGAATTG 1136
|||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1010 TTGTGATGGCCATAAAATGCCGTGGAGATCATGTATTAGGAGGTCTATTTACCGGAATTG 1069
Query 1137 ATACCCGGCACATTGTTATGACAAGCAAGATGGTTGAGGAGTACACTGGTATGCAAACGC 1196
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
Sbjct 1070 ATACTCGGCACATTGTTATGACAAGCAAGATGGTAGAGGAGTACACTGGGATGCAGACAC 1129
Query 1197 AGCCCCATAAGGCTATTG 1214
| || |||||||||||||
Sbjct 1130 AACCTCATAAGGCTATTG 1147
> AT3G32445.1 | Symbols: | pseudogene, putative ribonucleotide
reductase, blastp match of 60% identity and 6.2e-22 P-value
to SP|O04974|LU1B_LYCPN 2-isopropylmalate synthase B (EC 4.1.3.12)
(Alpha-isopropylmalate synthase B) (Alpha-IPM synthetase
B). (Tomato) {Lycopersicon pennellii} | chr3:13384833-13387113
FORWARD LENGTH=2281
Length=2281
Score = 110 bits (59), Expect = 8e-23
Identities = 104/126 (83%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 1642 GGAACCTGCGACTCTACTTGAGTACTCGATGAATGCAGTAACAGAAGGCATTGATGCTAT 1701
||||| | | ||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1939 GGAACATACAACTCTTCTTGAGTACTCAATGAATGCAGTAACAGAAGGCATTGATGCCAT 1998
Query 1702 TGCAACCACACGGGTTCTAATCCGCGGA-GACAACAACTACTCATCAACAAACGCGGTAA 1760
||||| ||||| ||| | ||||| ||| | | |||| || |||| |||||| | ||||
Sbjct 1999 CGCAACTACACGAGTTTTTATCCGTGGAAG-CTACAAAAACACATCTACAAACACAGTAA 2057
Query 1761 CCGGTG 1766
| ||||
Sbjct 2058 CTGGTG 2063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105772548315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5