BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476546
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74050.1 | Symbols: | Ribosomal protein L6 family protein |... 1520 0.0
AT1G74060.1 | Symbols: | Ribosomal protein L6 family protein |... 1155 0.0
AT1G18540.1 | Symbols: | Ribosomal protein L6 family protein |... 669 0.0
> AT1G74050.1 | Symbols: | Ribosomal protein L6 family protein
| chr1:27847047-27848806 REVERSE LENGTH=1037
Length=1037
Score = 1520 bits (823), Expect = 0.0
Identities = 948/1008 (94%), Gaps = 9/1008 (1%)
Strand=Plus/Plus
Query 1 AAGGAAGCCCTAAAATTAAATTAGGGTTTCAGTGTCTTCAAATTTACCAATCCTCCGCCT 60
||| ||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 1 AAGAAAGCCCTAAAATTTAATTAGGGTTTCAGTGTCTTCAAATTCACCTATCCTCAGCCT 60
Query 61 CAACTCTCTCCTCTATCCACTCTCAGCCGGAAAGTTTTTCCTTGATTCATTACGACAGAG 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CAACTCTCTCCTCTATCCACTCTCAGCCGGAAAATTTTTCCTTGATTCATTACGACAGAG 120
Query 121 AGAACCATGCCGGCGAAACAGAGGACGGCGAAGGTCAACAGAAACCCTGATCTGGTCAGG 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 121 AGAACCATGCCGGCGAAACAGAGGACCCCGAAGGTCAACAGAAACCCTGATCTGATCAGG 180
Query 181 GGAGTTGGTAAATACTCGAGATCTCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAG 240
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTGTTGGTAAATACTCGAGATCCCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAG 240
Query 241 GCCAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGGTGATACTCCGGCG 300
||||||||||||||||||||||| || ||||||||||||||||||| |||| |||||| |
Sbjct 241 GCCAAAAATGGAGGCGTTTTCCCACGTCACGACGCTAAATCTAAGGTTGATGCTCCGGTG 300
Query 301 GAAAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGC 360
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 301 GAGAAGCCACCGAAGTTCTATCCAGCTGAAGATGTTAAGAAACCTCTCCCCAACAGGCGC 360
Query 361 ACGCCAAAACCTACCAAGCTCAGAGCTAGCATTACCCCAGGGACAGTGCTGATTATTCTT 420
||| ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||| |||
Sbjct 361 ACGGCAAAACCAACCAAGCTCAGAGCTAGCATTACTCCAGGTACAGTGTTGATTATCCTT 420
Query 421 GCTGGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTTTGCTT 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTGGTAGGTTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTTTGCTT 480
Query 481 CTTGTGACTGGACCATTCAAGGTTAATGGTGTTCCTTTGAGACGTGTGAACCAGGCCTAT 540
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 481 CTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGGCCTAT 540
Query 541 GTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTCGATGAT 600
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGATTGGCACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTCGATGAT 600
Query 601 AAGTACTTTGGCAAGGTTGCTgagaagaaaaagaagaagacagagggagagttctttgag 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 AAGTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACAGAAGGAGAGTTCTTTGAG 660
Query 661 gctgagaaagaggagaagaagcagaTCCCACAGG-GAAAGAAAGATGATCAGAAAGCCGT 719
||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||||| ||
Sbjct 661 GCTGAGAAAGAGGAGAAGAAGGAGATCCCACAGGTGAA-GAAAGATGACCAGAAAGCTGT 719
Query 720 GGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGCTGAAGACTTACCTAGGCGC 779
||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 720 GGATGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTTGGCGC 779
Query 780 AAGGTTTTCATTGAAACAAGGAATGAAGCCACATGAACTTGTTTTCTAGGTTTCATAACC 839
|||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||
Sbjct 780 AAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTCATTACT 839
Query 840 tttttt-tGAGTTTTCTAGAGTATCTGTGTCCTGAAGTGTTTTACCTTCTAAATGGTTGT 898
|||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 840 TTTTTTCTGAGGTCTCTAGAGTATCTGTCTCCTGAAGTGTTTTACCTTCTAAATGGTTGT 899
Query 899 TTTGTTCTTGTTCACTGACCAGAGACATACAATTTTTGGCTTATACATTCTCTGTTCTTA 958
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 900 TTTGTTCTTGTTCACTGAACA----CATACAATTTTTGGCTTATACATTCTCTGTTCTTA 955
Query 959 CGTATGGATAAACTATCGATCTTGTTTTCGGAT-GTGAGCTTTGAAGC 1005
|||||||| |||||||||||| |||||| | || |||||||||| |||
Sbjct 956 CGTATGGACAAACTATCGATCCTGTTTTTG-ATTGTGAGCTTTGTAGC 1002
> AT1G74060.1 | Symbols: | Ribosomal protein L6 family protein
| chr1:27849833-27851374 REVERSE LENGTH=977
Length=977
Score = 1155 bits (625), Expect = 0.0
Identities = 801/883 (91%), Gaps = 23/883 (3%)
Strand=Plus/Plus
Query 117 AGAGAG-AACCATGCCGGCGAAACAGAGGACGGCGAAGGTCAACAGAAACCCTGATCTGG 175
||| || ||| |||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 65 AGAAAGTAACGATGCCGGCGAAACAGAGGACAGCTAAGGTCAACAGGAATCCTGATCTGA 124
Query 176 TCAGGGGAGTTGGTAAATACTCGAGATCTCAGATGTACCATAAGAGAGGTTTGTGGGCTA 235
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 125 TCAGGGGAGTTGGTAAATACTCAAGGTCTCAGATGTACCATAAGAGAGGTTTGTGGGCAA 184
Query 236 TCAAGGCCAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGGTGATACTC 295
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 185 TCAAGGCCAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGTTGATGCTC 244
Query 296 CGGCGGAAAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACA 355
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CGGTGGAGAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACA 304
Query 356 GGCGCACGCCAAAACCTA-CCAAGCTCAGAGCTAGCATTACCCCAGGGACAGTGCTGATT 414
|||||||| ||||||| | ||||||||||||||||||| || |||||||||||||| ||
Sbjct 305 GGCGCACGGCAAAACC-AGCCAAGCTCAGAGCTAGCATCACTCCAGGGACAGTGCTTATC 363
Query 415 ATTCTTGCTGGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGT 474
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 364 ATCCTTGCTGGTAGATTTAAGGGCAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCCGGT 423
Query 475 TTGCTTCTTGTGACTGGACCATTCAAGGTTAATGGTGTTCCTTTGAGACGTGTGAACCAG 534
||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||||||
Sbjct 424 TTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTCTGAGACGTGTTAACCAG 483
Query 535 GCCTATGTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTC 594
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 484 GCCTATGTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTTACCCTCGACAAATTC 543
Query 595 GATGATAAGTACTTTGGCAAGGTTGCTgagaagaaaaagaagaagacagagggagagttc 654
|||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||
Sbjct 544 GATGATAAGTACTTCGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACTGAAGGAGAGTTC 603
Query 655 tttgaggctgagaaagaggagaagaa-gcagaTCCCACAGGGAAAGAAAGATGATCAGAA 713
|| ||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||
Sbjct 604 TTCGAGGCTGAGAAAGAGGAGAAGAAAG-AGATTCCACAGGGAAAGAAAGATGACCAGAA 662
Query 714 AGCCGTGGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGCTGAAGACTTACCT 773
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 663 AGCCGTGGACGCAGCTTTGATCAAAGCTATTGAAGCAGTTCCAGAGTTGAAGACTTACCT 722
Query 774 AGGCGCAAGGTTTTCATTGAAACAAGGAATGAAGCCACATGAACTTGTTTTCTAGGTTTC 833
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 723 CGGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTC 782
Query 834 ATAACCtttttt-tGAGTTTTCTAGAGTATCTGTGTCCTGAAGTGTTTTAC-CTTCTAAA 891
|| || |||||| |||| ||||||| |||||||| ||||||||| ||| || || | ||
Sbjct 783 ATTACTTTTTTTCTGAGGTTTCTAGTGTATCTGTCTCCTGAAGT-TTT-ACACTCC-AAC 839
Query 892 TGGTTGTTT-TGTTCTTGTTCACTGACCAGAGACATACAATTTTTG--GCT--TATAC-- 944
|||||| || |||||| || ||||||||||||||||| ||| || | ||| ||| |
Sbjct 840 TGGTTGGTTCTGTTCTCGTCCACTGACCAGAGACATAAAATCTTGGCTGCTGCTAT-CTG 898
Query 945 -ATTCTCTGTTCTTACGTATGGATAAACTATCGATCTTGTTTT 986
||| ||||| |||| ||||||||| |||| ||| ||||||
Sbjct 899 GATT-TCTGT-CTTA--TATGGATAATTTATCAATCCTGTTTT 937
> AT1G18540.1 | Symbols: | Ribosomal protein L6 family protein
| chr1:6377321-6378580 REVERSE LENGTH=861
Length=861
Score = 669 bits (362), Expect = 0.0
Identities = 597/712 (84%), Gaps = 10/712 (1%)
Strand=Plus/Plus
Query 127 ATGCCGGC-GAAACAGAGGACGGCGAAGGTCAACAGAAACCCTGATCTGGTCAGGGGAGT 185
|||||||| | | ||||||| | ||||| ||| | |||||||| || ||||||||||
Sbjct 33 ATGCCGGCGGCGA-AGAGGACTCCCAAGGTTAACCGTAACCCTGACCTAATCAGGGGAGT 91
Query 186 TGGTAAATACTCGAGATCTCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAGGCCAA 245
||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 92 TGGAAAATATTCGAGGTCTCAGATGTACCACAAGAGAGGTTTGTGGGCTATCAAGGCCAA 151
Query 246 AAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGGT-GATACTCCGGCGGAAA 304
|| || ||||||||||| || ||||| ||| | | |||| | || |||||| || |
Sbjct 152 GAACGGTGGCGTTTTCCCTCGTCACGATGCTCAGCCAAAGG-TCGACGCTCCGGTTGAGA 210
Query 305 AGCCA-CCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCACG 363
|||| || ||||| ||||| || |||||||| ||||| || || ||||| |||| |
Sbjct 211 AGCCTGCC-AAGTTTTATCCGGCGGAAGACGTCAAGAAGCCGCTTGTTAACAGACGCAAG 269
Query 364 CCAAAACCTACCAAGCTCAGAGCTAGCATTACCCCAGGGACAGTGCTGATTATTCTTGCT 423
|| || ||||||||||| | ||| ||||| || ||||| || ||| |||| |||||||||
Sbjct 270 CCTAAGCCTACCAAGCTAAAAGCCAGCATCACTCCAGGAACTGTGTTGATCATTCTTGCT 329
Query 424 GGTAGATTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTTTGCTTCTT 483
|||||||||||||| ||||||||||||||||| ||||| ||| | |||||||||||||||
Sbjct 330 GGTAGATTCAAGGGTAAGAGAGTTGTCTTCCTCAAGCAACTTTCTTCTGGTTTGCTTCTT 389
Query 484 GTGACTGGACCATTCAAGGTTAATGGTGTTCCTTTGAGACGTGTGAACCAGGCCTATGTC 543
|| || |||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 390 GTAACAGGACCATTCAAGATTAATGGTGTTCCATTGAGACGTGTTAACCAAGCCTATGTG 449
Query 544 ATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACC-CTCGATAAATTCGATGATAA 602
||||| || ||||||||| |||||||||||||||||| | || || ||||||||||| ||
Sbjct 450 ATTGGAACCTCCACAAAGATTGACATTTCTGGAGTCAACACT-GAGAAATTCGATGACAA 508
Query 603 GTACTTTGGCAAGGTTGCTgagaagaaaaagaagaagacagagggagagttctttgaggc 662
||| ||||| ||||||||||||||||| |||||||| ||||| || || ||||| || ||
Sbjct 509 GTATTTTGGAAAGGTTGCTGAGAAGAAGAAGAAGAAAACAGAAGGCGAATTCTTCGAAGC 568
Query 663 tgagaaagaggagaagaagcagaTCCCACAGG-GAAAGAAAGATGATCAGAAAGCCGTGG 721
||||||||||||||||||| |||||||||||| ||| ||| || || |||||| |||| |
Sbjct 569 TGAGAAAGAGGAGAAGAAGGAGATCCCACAGGAGAA-GAAGGAAGACCAGAAAACCGTTG 627
Query 722 ACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGCTGAAGACTTACCTAGGCGCAA 781
| || ||| |||||||| |||||||||| || |||||||| ||| |||||| || || |
Sbjct 628 ATGCTGCTCTGATCAAATCCATTGAAGCTGTCCCAGAGCTCAAGGTTTACCTTGGAGCCA 687
Query 782 GGTTTTCATTGAAACAAGGAATGAAGCCACATGAACTTGTTTTCTAGGTTTC 833
|||| ||||||| ||||||||||| |||||||| |||||||||||| ||||
Sbjct 688 GGTTCTCATTGAGTCAAGGAATGAAACCACATGAGCTTGTTTTCTAGATTTC 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5