BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476547
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74055.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 739 0.0
> AT1G74055.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 6 growth stages; Has 24 Blast hits to
24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:27849230-27849812 FORWARD LENGTH=583
Length=583
Score = 739 bits (400), Expect = 0.0
Identities = 499/547 (91%), Gaps = 6/547 (1%)
Strand=Plus/Plus
Query 1 AAATATTGAATCTTGATCTCCGAAAACCAAAACATCATTAGA-TCTAATGGCTATGGCTA 59
|||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||
Sbjct 4 AAATATTGAATCTTGATCACCGAAAACCAAAATTTCATTAGATTC-AATGGCTATGGCTA 62
Query 60 GTAGTAGTAGCAACTCGTCGTTGTTTCCTACCCAACAACAACCGCAACAGCAATTAGGAG 119
|||||||||||| |||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 63 GTAGTAGTAGCAGCTCGTCATTGTTTCCTATCCAACAACAACCTCAACAACAATTAGGAG 122
Query 120 GCAATGAGTTCCA-ACCTACGGCTACCAACGTCAATCTAATTGCAGCACCAAACGCTCCA 178
|||||||| | || ||||| ||||||||| | ||||||||| ||||||||||||||||||
Sbjct 123 GCAATGAGAT-CACACCTATGGCTACCAATGCCAATCTAATCGCAGCACCAAACGCTCCA 181
Query 179 AACCATTACTCTTCCGGCTCCATTGGACCCTTCTTTGCAGTCATCTCTGTTCTCGTCGTT 238
||||||||||||||| ||||||||||||||||||| || ||||| ||||||||| || ||
Sbjct 182 AACCATTACTCTTCCAGCTCCATTGGACCCTTCTTCGCTGTCATATCTGTTCTCATCATT 241
Query 239 CTTGCAGTCCTCTCCTGCTTCTTGGGTCGCATA-TGTGCACGGCGCCGCCAGAGAACTGT 297
||||| || |||||||||||||||||||| || || |||||| |||||||||||||||
Sbjct 242 CTTGCTGTTCTCTCCTGCTTCTTGGGTCG-ATTCTGCGCACGGAGCCGCCAGAGAACTGG 300
Query 298 TTTAGTGGCAGAAGTCAATCCATTGGAGATGATAAAGAGTGGTGGGCTTTTAGGATGGCT 357
| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 301 TCTAGTGGCTGAAGTCAATCCGTTGGAGATGATAAAGAGTGGTGGGCTTTTAGGTTGGCT 360
Query 358 GAGACGAAAATGGAGACGGTGTTTGGCTGGAGATGTTGAGGCCGGAGCTAAAGTTGCCGA 417
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 361 GAGACGAAAATGGAGACGGTGTTTGGCCGGAGATGTTGAGGCCGGAGCTAAAGTTGCTGA 420
Query 418 TTGTGCCAGCAAAGAAACACCTAAAGATAATGATCAAACTCGCCTTGAAGCACCTCCAGC 477
|||||| ||||||||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct 421 TTGTGCTAGCAAAGAAACACCTAAAGATAATGATCAAATTCGTCTAGAAGCACCTCCAGC 480
Query 478 TTGATCTAGGTGCGTGTGTGAGAGACTAGTAATAAGAGTATCAACATTCGAAGTAGAATG 537
||||||| ||||| |||| ||||||||||||||||||| |||| |||||||||||| ||
Sbjct 481 TTGATCTCGGTGCATGTGACAGAGACTAGTAATAAGAGTTTCAATATTCGAAGTAGATTG 540
Query 538 TAAGCTA 544
|||||||
Sbjct 541 TAAGCTA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5