BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476548
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74060.1 | Symbols: | Ribosomal protein L6 family protein |... 1264 0.0
AT1G74050.1 | Symbols: | Ribosomal protein L6 family protein |... 1146 0.0
> AT1G74060.1 | Symbols: | Ribosomal protein L6 family protein
| chr1:27849833-27851374 REVERSE LENGTH=977
Length=977
Score = 1264 bits (684), Expect = 0.0
Identities = 819/882 (93%), Gaps = 18/882 (2%)
Strand=Plus/Plus
Query 33 AACCATGCCGGCGAAACAGAGGACACCTAAGGTCAACAGGAACCCTGATCTGATCAGGGG 92
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 72 AACGATGCCGGCGAAACAGAGGACAGCTAAGGTCAACAGGAATCCTGATCTGATCAGGGG 131
Query 93 AGTTGGTAAATACTCAAGATCGCAGATGTACCATAAAAGAGGTTTGTGGGCAATCAAGGC 152
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 132 AGTTGGTAAATACTCAAGGTCTCAGATGTACCATAAGAGAGGTTTGTGGGCAATCAAGGC 191
Query 153 CAAAAATGGAGGCGTTTTCCCCCGCCACGATGCTAAATCCAAGGTTGATGCTCCAGCGGA 212
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |||
Sbjct 192 CAAAAATGGAGGCGTTTTCCCCCGCCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGA 251
Query 213 GAAACCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCAC 272
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GAAGCCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCAC 311
Query 273 GCCAAAACCAACCAAGCTCAGATACTCAGCCAGCATCACCT-CAGGAACTGTG-TTGATT 330
| |||||||| |||||||||| ||| ||||||| || |||| || ||| || ||
Sbjct 312 GGCAAAACCAGCCAAGCTCAG------AGCTAGCATCA-CTCCAGGGACAGTGCTT-ATC 363
Query 331 ATTCTTGCTGGTAGGTTCAAGGGAAAGAGAGTTGTTTTTCTTAAGCAGCTTCCCTCTGGT 390
|| ||||||||||| || ||||| ||||||||||| || |||||||||||| |||| |||
Sbjct 364 ATCCTTGCTGGTAGATTTAAGGGCAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCCGGT 423
Query 391 TTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAG 450
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 424 TTGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTCTGAGACGTGTTAACCAG 483
Query 451 GCCTATGTGATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAATTTC 510
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 484 GCCTATGTCATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTTACCCTCGACAAATTC 543
Query 511 GATGATAAGTACTTTGGCAAGGTTGCTgagaagaaaaagaagaagactgaaggagagttc 570
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GATGATAAGTACTTCGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACTGAAGGAGAGTTC 603
Query 571 ttcgaagctgagaaagaggagaa-aaaggagaTTCCACAAGGAAAGAAAGATGACCAGAA 629
||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 604 TTCGAGGCTGAGAAAGAGGAGAAGAAA-GAGATTCCACAGGGAAAGAAAGATGACCAGAA 662
Query 630 AGCCGTGGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCT 689
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 663 AGCCGTGGACGCAGCTTTGATCAAAGCTATTGAAGCAGTTCCAGAGTTGAAGACTTACCT 722
Query 690 CGGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTCTTCTAGATTTC 749
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 723 CGGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTC 782
Query 750 ATTACCTTTTT-CTGAGGTTTCTAGAGTATCTGTCTCCTGAAATTTTTACACTCCAAATG 808
||||| ||||| ||||||||||||| |||||||||||||||| |||| ||||||||| ||
Sbjct 783 ATTACTTTTTTTCTGAGGTTTCTAGTGTATCTGTCTCCTGAAGTTTT-ACACTCCAACTG 841
Query 809 GTTGGGTCTGTTCTCGTCCACTGACCAGAGACATAAATT-TTGGCT-CAACTATCTGGAT 866
||||| ||||||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct 842 GTTGGTTCTGTTCTCGTCCACTGACCAGAGACATAAAATCTTGGCTGCTGCTATCTGGAT 901
Query 867 TTCTGTTTTACATATGGATAATTTATCAATCTTGTTTTTGAA 908
|||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 902 TTCTGTCTTA--TATGGATAATTTATCAATCCTGTTTTTGAA 941
> AT1G74050.1 | Symbols: | Ribosomal protein L6 family protein
| chr1:27847047-27848806 REVERSE LENGTH=1037
Length=1037
Score = 1146 bits (620), Expect = 0.0
Identities = 799/882 (91%), Gaps = 25/882 (3%)
Strand=Plus/Plus
Query 33 AACCATGCCGGCGAAACAGAGGACACCTAAGGTCAACAGGAACCCTGATCTGATCAGGGG 92
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 123 AACCATGCCGGCGAAACAGAGGACCCCGAAGGTCAACAGAAACCCTGATCTGATCAGGGG 182
Query 93 AGTTGGTAAATACTCAAGATCGCAGATGTACCATAAAAGAGGTTTGTGGGCAATCAAGGC 152
|||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 183 TGTTGGTAAATACTCGAGATCCCAGATGTACCATAAGAGAGGTTTGTGGGCTATCAAGGC 242
Query 153 CAAAAATGGAGGCGTTTTCCCCCGCCACGATGCTAAATCCAAGGTTGATGCTCCAGCGGA 212
||||||||||||||||||||| || ||||| |||||||| |||||||||||||| | |||
Sbjct 243 CAAAAATGGAGGCGTTTTCCCACGTCACGACGCTAAATCTAAGGTTGATGCTCCGGTGGA 302
Query 213 GAAACCACCGAAGTTCTATCCAGCTGAAGACGTGAAGAAACCTCTCCCCAACAGGCGCAC 272
||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 303 GAAGCCACCGAAGTTCTATCCAGCTGAAGATGTTAAGAAACCTCTCCCCAACAGGCGCAC 362
Query 273 GCCAAAACCAACCAAGCTCAGATACTCAGCCAGCATCACCT-CAGGAACTGTGTTGATTA 331
| ||||||||||||||||||| ||| ||||| | || |||| || ||||||||||
Sbjct 363 GGCAAAACCAACCAAGCTCAG------AGCTAGCATTA-CTCCAGGTACAGTGTTGATTA 415
Query 332 TTCTTGCTGGTAGGTTCAAGGGAAAGAGAGTTGTTTTTCTTAAGCAGCTTCCCTCTGGTT 391
| |||||||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct 416 TCCTTGCTGGTAGGTTCAAGGGAAAGAGAGTTGTCTTCCTTAAGCAGCTTGCCTCTGGTT 475
Query 392 TGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGG 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGCTTCTTGTGACTGGACCATTCAAGATCAATGGTGTTCCTTTGAGACGTGTTAACCAGG 535
Query 452 CCTATGTGATTGGTACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAATTTCG 511
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 536 CCTATGTGATTGGCACTTCCACAAAGGTTGACATTTCTGGAGTCACCCTCGATAAATTCG 595
Query 512 ATGATAAGTACTTTGGCAAGGTTGCTgagaagaaaaagaagaagactgaaggagagttct 571
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 596 ATGATAAGTACTTTGGCAAGGTTGCTGAGAAGAAAAAGAAGAAGACAGAAGGAGAGTTCT 655
Query 572 tcgaagctgagaaagaggagaaaaaggagaTTCCACAAG-GAAAGAAAGATGACCAGAAA 630
| || ||||||||||||||||| |||||||| ||||| | ||| ||||||||||||||||
Sbjct 656 TTGAGGCTGAGAAAGAGGAGAAGAAGGAGATCCCACAGGTGAA-GAAAGATGACCAGAAA 714
Query 631 GCCGTGGACGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTC 690
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCTGTGGATGCAGCTTTGATCAAAGCCATTGAAGCAGTTCCAGAGTTGAAGACTTACCTT 774
Query 691 GGAGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTCTTCTAGATTTCA 750
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 GGCGCAAGGTTTTCATTGAAACAAGGAATGAAGCCCCATGAGCTTGTTTTCTAGATTTCA 834
Query 751 TTACCTTTTT-CTGAGGTTTCTAGAGTATCTGTCTCCTGAAAT-TTTTACACTCC-AAAT 807
|||| ||||| ||||||| |||||||||||||||||||||| | |||||| || | ||||
Sbjct 835 TTACTTTTTTTCTGAGGTCTCTAGAGTATCTGTCTCCTGAAGTGTTTTAC-CTTCTAAAT 893
Query 808 GGTTGGGTCTGTTCTCGTCCACTGACCAGAGACATAAATTTTGGCTCAACTATCTGGATT 867
||||| | |||||| || |||||| || | ||| | |||||||| | || | |||
Sbjct 894 GGTTGTTT-TGTTCTTGTTCACTGAACACATACA-AT-TTTTGGCTTA--TA-C---ATT 944
Query 868 -TCTGTT-TTACATATGGATAATTTATCAATCTTGTTTTTGA 907
|||||| |||| |||||| || |||| ||| |||||||||
Sbjct 945 CTCTGTTCTTACGTATGGACAAACTATCGATCCTGTTTTTGA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44356751801
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5