BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476550
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74080.1 | Symbols: ATMYB122, MYB122 | myb domain protein 12... 1480 0.0
> AT1G74080.1 | Symbols: ATMYB122, MYB122 | myb domain protein
122 | chr1:27855699-27857534 FORWARD LENGTH=1377
Length=1377
Score = 1480 bits (801), Expect = 0.0
Identities = 1076/1201 (90%), Gaps = 49/1201 (4%)
Strand=Plus/Plus
Query 57 CTTCATGTTTTTATCAAAAGATCTAGTCCTTTCGTTGTATGATCGATCCATCACAAGCCC 116
||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 146 CTTAATGTTCTTACCAAAAGATCTAGTCCTTTCTTTGTATGATCGATCCATCACAAGCCC 205
Query 117 ACAAGAACAACATTTCTCTATC-TCTCTTTCTCGA--TCTAGCTTCAATTATTAATACAT 173
|||| ||||||| ||| | |||||||||| | ||||||||| |||||||||||||
Sbjct 206 ACAACAACAACA----ACTA-CATCTCTTTCTCTATCTCTAGCTTCTATTATTAATACAT 260
Query 174 TCAAGAATCAAGAATGGTACGGACGCCGTGTTGTAGAGCAGAAGGGTTGAAGAAAGGAGC 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TCAAGAATCAAGAATGGTACGGACGCCGTGTTGTAGAGCAGAAGGGTTGAAGAAAGGAGC 320
Query 234 ATGGACTCAAGAAGAAGACCAAAAACTCATCGCCTATGTTCAACGACACGGTGAAGGCGG 293
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 321 ATGGACTCAAGAAGAAGACCAAAAGCTTATCGCCTATGTTCAACGACATGGTGAAGGCGG 380
Query 294 TTGGCGAACCCTTCCGGATAAAGCTGGACTCAAAAGATGTGGCAAAAGCTGCAGATTGAG 353
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TTGGCGAACCCTTCCGGACAAAGCTGGACTCAAAAGATGTGGCAAAAGCTGCAGATTGAG 440
Query 354 ATGGGCGAATTACCTAAGACCTGACATTAAACGTGGAGAGTTTAGCCAAGAGGAGGAAGA 413
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 441 ATGGGCGAATTACTTAAGACCTGACATTAAACGTGGAGAGTTTAGCCAAGACGAGGAAGA 500
Query 414 TTCCATCATCAACCTCCATGCCATTCATGGCAACAAATGGTCGGCCATAGCTCGTAAATT 473
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 501 TTCCATCATCAACCTCCACGCCATTCATGGCAACAAATGGTCGGCCATAGCTCGTAAAAT 560
Query 474 ACCAAGAAGAACAGACAATGAGATCAAGAACCATTGGAACACTCACATCAAGAAACGTCT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 561 ACCAAGAAGAACAGACAATGAGATCAAGAACCATTGGAACACTCACATCAAGAAATGTCT 620
Query 534 GGTCAAGAAAGGTATCGATCCGTTGACCCACAAATTCCTTCAT-GATGGTGCCAGTAAAT 592
||||||||||||||| ||||||||||||||||||| ||||| | ||||| ||| ||||||
Sbjct 621 GGTCAAGAAAGGTATTGATCCGTTGACCCACAAATCCCTTC-TCGATGGAGCCGGTAAAT 679
Query 593 CATCTGACTATCCCGAGACACCGCATCCAGAGAAAAGCAGCTTTCGTCACGAGGAAGATG 652
|||||||| || ||| | |||||| |||||||||||| ||| | |||| ||||||
Sbjct 680 CATCTGACCATTCCG---C---GCATCCCGAGAAAAGCAGCGTTCATGACGACAAAGATG 733
Query 653 ATCAGAATTCAAATAACAAAAAGTCGTCAGGATCATCATCAGCTCGGTTTTTGAACAGAG 712
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 734 ATCAGAATTCAAATAACAAAAAGTTGTCAGGATCATCATCAGCTCGGTTTTTGAACAGAG 793
Query 713 TAGCTAACAGATTTGGTCACAGAATCAACCACAATGTTCTGTCTAATATTATTGGAAGTA 772
|||| |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 794 TAGCAAACAGATTCGGTCATAGAATCAACCACAATGTTCTGTCTGATATTATTGGAAGTA 853
Query 773 GTAGCCTACTTACTAGTCACACTACTCCTACTACAAGTGTTTCAGA-GCGTGAGAGATCA 831
| ||||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||
Sbjct 854 ATGGCCTACTTACTAGTCACACTACTCCAACTACAAGTGTTTCAGAAG-GTGAGAGGTCA 912
Query 832 AATAGTTCTTCCTCCACACCTACCTCTTCGAATCTCCCCATGTACCAAAGCATAACCGTT 891
| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||
Sbjct 913 ACGAGTTCTTCCTCCACACATACCTCTTCGAATCTCCCCATCAACCGTAGCATAACCGTT 972
Query 892 GATGCAACATCTTTGTCCTCGTCCACGTTCTCTGACTCCTCGGATCCGTTTTTGTACGAC 951
|||||||||||| | ||||| |||||||||||||||||| | || |||| ||| |||||
Sbjct 973 GATGCAACATCTCTATCCTCATCCACGTTCTCTGACTCCCCCGACCCGTGTTTATACGAG 1032
Query 952 GATATCTTCGGTGACATTGAAGATATGACGAGATTTTCATCGAGATGTTTGAGTGATGTT 1011
|| || |||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1033 GAAATAGTCGGTGACATTGAAGATATGACGAGATTTTCATCAAGATGTTTGAGTCATGTT 1092
Query 1012 CTATCTCACGATGATGAA--GA-GTTC-TTGA-T---GT----------C--CG---ATG 1048
||||||| || ||| | || || | |||| | || | | |||
Sbjct 1093 TTATCTCATGAAGATTTATTGATGTCCGTTGAGTCTTGTTTGGAGAATACTTCATTCATG 1152
Query 1049 AGG-AACTTGCAATGATCTTTCGAGAGGATAAAACCGAGACGACGTCGTTTAATGATAGC 1107
||| || || |||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1153 AGGGAAATTACAATGATCTTTCAAGAGGATAAAATCGAGACGACGTCGTTTAATGATAGC 1212
Query 1108 CACGCGAAGCTGATCAATGAAGTTGATGACTCCTTTGAAGGGATTGACAATTATATTGGA 1167
||| || || ||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1213 TACGTGACGCCGATCAATGAAGTTGATGACTCCTGTGAAGGGATTGACAATTATTTTGGA 1272
Query 1168 TGAGT-ATATTGATGATGATGAAAATTTG-----G-CATGTAAATCAATTAGAGTTTGAT 1220
||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1273 TGAGTTATATTGATGATGATGAAAATTTGCATTTGGCATGTAAATCAATTAGAGTTTGAT 1332
Query 1221 T 1221
|
Sbjct 1333 T 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5