BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476551
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74088.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 379 2e-104
> AT1G74088.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is: galacturonosyltransferase
11 (TAIR:AT1G18580.1). | chr1:27861116-27862750
FORWARD LENGTH=666
Length=666
Score = 379 bits (205), Expect = 2e-104
Identities = 236/250 (94%), Gaps = 5/250 (2%)
Strand=Plus/Plus
Query 542 CGGGAAGTATAAACCTTACTGGGACAGGTACACTCGAGCCATTCTTATTTGCAAGATTGC 601
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CGGGAAGTAAAAACCTTACTGGGACAGGTACACTCGAGCCATTCTTATTTGCAAGATTGT 481
Query 602 ATCACAGCTTAAAACACTTGAAGAGTTTGTTTTCTTCTTCATCAAGTCATTACGAAAATA 661
||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 482 ATCACAGCTTAAAGCACTTGAAGAGTTTG--TT-TTCTTCATCAAGTCATTACGAAAATA 538
Query 662 GATATCTAGATACTTACTTAGTCAGGTTGAATCTTATGCATTATATATTGTAGATCTTAG 721
|||||||||||||||||||| |||||||||||||| | ||||| | |||||||| ||||
Sbjct 539 GATATCTAGATACTTACTTAATCAGGTTGAATCTTGTACATTA-A-ATTGTAGACCTTAT 596
Query 722 AACAGCAGCAGATTCAGATTTCTGCAAGTGAAGAGTGTAGTTTATAGTTGAATAGATTAC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AACAGCAGCAGATTCAGATTTCTGCAAGTGAAGAGTGTAGTTTATAGTTGAATAGATTAC 656
Query 782 AGAGAAGAGC 791
||| ||||||
Sbjct 657 AGATAAGAGC 666
Score = 111 bits (60), Expect = 8e-24
Identities = 65/67 (97%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 452 AGA-CCGTCTCTTCAGGAGCTAGTGGATGAGAACATAAACTCAACTAGACTCGTTGACAA 510
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 356 AGAGCCGTCTCTTCAGGAGCTAGTGGATGAGAACATAAACTCAACTAGACCCGTTGACAA 415
Query 511 CAACCTC 517
|||||||
Sbjct 416 CAACCTC 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5