BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476555
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74120.1 | Symbols: | Mitochondrial transcription terminati... 2357 0.0
> AT1G74120.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr1:27871274-27873260 REVERSE
LENGTH=1987
Length=1987
Score = 2357 bits (1276), Expect = 0.0
Identities = 1647/1818 (91%), Gaps = 57/1818 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTCAAAACTGAAAACCTTCACCAATCTCCATGGCTACACAATAACAACCTTACTC 60
||||| |||||||| |||||||||| |||||||| || |||| ||||||| || || ||
Sbjct 1 ATGGCCTCAAAACTCAAAACCTTCATCAATCTCCGTGACTACCCAATAAC--CC-TATTC 57
Query 61 CACCAGAGTCGATCACTATCTTCAAATCCCTCTTCACGAATTCTTACACCTATCAATCAA 120
|||||| ||||| | | | | || | | ||||||||||| |||||||||||||||
Sbjct 58 AACCAGATTCGAT--C-A-C-T---AT--C-C-TCACGAATTCTCACACCTATCAATCAA 105
Query 121 TCGCACTACAGGAAACGAATTTTACTAGCGAATCTTCTTCATAGGTATGGCTTCCCTCCT 180
|| ||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||
Sbjct 106 TCTCACTACAGGAAACGAATTTTACTCGCGAATCTCCTTCAGAGGTATGGTTTCCCTCCT 165
Query 181 TCTTCTCTCCAACACTTCCTCTCTAGAAACAATCACCTATTGAATTTGGATTTAGTAGAA 240
|||||||| || ||||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 166 TCTTCTCTTCAGCACTTCCTCTCAAGAAACAATCACCTATTGAATTCGGACTTAGTAGAA 225
Query 241 ACCGAAGCATCTCTCGGTATCTTGTTATCGTTAAAAATCCCTCAGAAATCTCTCGTTTCG 300
|||||| |||||||| ||| | || || || ||||||||||||||||| |||||||||
Sbjct 226 ACCGAAATTTCTCTCGGCATCCTATTGTCATTGAAAATCCCTCAGAAATCACTCGTTTCG 285
Query 301 TTGATTTGCGATTGCCCTAATGTTCTGCGATCAGAGTTCCTGAGGAAATGGAGAGTTCCT 360
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 286 TTGATTTCCGATTGCCCTAATGTTCTGCGATCAGAGTTTCTGAGGAAATGGAGAGTTCCT 345
Query 361 CTGTTTGATTGCGGTAAACAC-G-GT-GTCTCATCTTCCGCGATTAAGAGCGTCCTTGAA 417
|||| | |||||||||||||| | || ||||||||||| |||||||||||||||||||||
Sbjct 346 CTGTCTAATTGCGGTAAACACGGTGTCGTCTCATCTTCTGCGATTAAGAGCGTCCTTGAA 405
Query 418 CATTCTAGTAGAATTGGGATTGGTCCAGATAAGTTTTATGAGTGCATAAGGGTTTTGAGG 477
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 406 CATTCTAGTAGAATTGGGATTGGTCCAGATAAGTTTAATGAGTGCGTAAGGGTTTTGAAG 465
Query 478 GGTTTAGGGTTTTGTGATAGTACTGTGAGTAGGATCTTAAGTTCATTCCCAGGTGTTCTT 537
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 466 AGTTTAGGGTTTTGTGATAGTACTGTGAGTAGGATTTTAAGTTCATTCCCTGGTGTTCTT 525
Query 538 TTAGTGAATGAGATTGAAATTCACAGGAAGATTGAATTTTTAGTTGGAATCGACATTCCT 597
|||||||||||||||||||||| ||||||||||| |||||||||||||| | |||| ||
Sbjct 526 TTAGTGAATGAGATTGAAATTCGTAGGAAGATTGAGTTTTTAGTTGGAATTGGCATTGCT 585
Query 598 CGAGATAACATTGAGAGGTTTTTTCACGTTTTTCCTGAGGTTCTAGGGATTGGTACTGAG 657
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 586 CGAGATAACATTGAGAGGTTCTTTCACGTTTTTCCTGAAGTTCTAGGGATTGGTACTGAG 645
Query 658 ACTAGACTTAAGCCATTGCTTGATGAGTTCATAAAGATGGGTTTTAGCAAGGATGATATA 717
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||
Sbjct 646 ACTAGACTTAAGCCATTGCTTGATGAGTTCATGAAGATGGGGTTTAGTAAGGATGATGTA 705
Query 718 AAGAAAGAGATTGCTAGAGAACCAAGAGTTCTTGGTTTGGAGTTAGGTGAGCTTCCGCGG 777
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 706 AAGAAAGAGATTGCTAGAGAACCGAGAGTTCTTGGTTTGGAGTTAGGTGAGCTTCCGCGG 765
Query 778 TGTTTGGAGTTGATCAATACATTGAAATGCCGGGAAGTGATCAGAGTTAGTATAATCAGC 837
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 766 TGTTTGGAGTTGATCAACACATTGAAATGCCGGGAAGTGATTAGAGTTAGTATAATCAGC 825
Query 838 GAGGGAGCATTCCGTGCTGGGTTTGAAGTGAAACTCAGAGTTGATTGTTTATGCAAATAC 897
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 826 GAAGGAGCATTTCGTGCTGGGTTTGAAGTGAAGCTCAGAGTTGATTGTTTATGCAAATAC 885
Query 898 GGGTTGATTCGTAGAGATGCATTCAAGGTTGTGTGGAAAGAGCCGAGGGTGATCTTATAT 957
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 886 GGGTTGATTCGTAGAGATGCATTCAAGGTTGTATGGAAAGAGCCGAGGGTGATCTTATAT 945
Query 958 GAGATAGAGGATATAGAGAAGAAGATTGAGTTTTTAACTAACAGAATGGGATTTCACATC 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 946 GAGATAGAGGATATAGAGAAGAAGATTGAGTTTTTAACTAACAGAATGGGATTTCATATC 1005
Query 1018 AATTGCTTAGCTGATGTACCGGAGTATCTAGGGGTTAACCTCCAGAAGCAGATCGTTCCA 1077
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1006 AATTGTTTAGCTGATGTACCGGAGTATCTAGGGGTTAATCTTCAGAAGCAGATCGTTCCA 1065
Query 1078 CGGTACAATGTCATTGATTACTTGAAACTAAAAGGTGGGCTTGGCTGTGATATTGGATTG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CGGTACAATGTCATTGATTACTTGAAACTAAAAGGTGGGCTTGGCTGTGATATTGGATTG 1125
Query 1138 AAAGGTTTGATAAAACCAAGTATGAAAAGATTCTATAATTTATACGTGAAGCCATACCCA 1197
||||||||||| |||||||| ||||||||||| |||||||| ||||||| ||||||||||
Sbjct 1126 AAAGGTTTGATCAAACCAAGCATGAAAAGATTTTATAATTTGTACGTGATGCCATACCCA 1185
Query 1198 GAGTGCGAAAGAATCTTTGGCAAGAGAAAAGAGAATGCCCGAGTTAATAAACGACATCCC 1257
||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 1186 GAGTGTGAAAGAATCTTTGGAAAGAGAAAAGAGAATGTCCGAGTGAATAAACGACATCCC 1245
Query 1258 GCTGGGCTTTGGAAGCTTATGAAGCCACCTAGCTATCTAACAACAAAAGAAGATGTGGTG 1317
|| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 1246 GCAGGGCTTTGGAAGCTTATGAAGCCGCCTAGCAATCTAACAACAAAAGAAGATGTGCAG 1305
Query 1318 AACATGAAGTCTTTTATAGAGTCACTTGCTTAGAATGCTTGAAACAAAGA-TTGCCTCTT 1376
||||||||||| ||||||||||||||||||||| ||| ||| | | || |||||||||
Sbjct 1306 AACATGAAGTCCTTTATAGAGTCACTTGCTTAGTATG-TTGGATCTTGGACTTGCCTCTT 1364
Query 1377 ACTAGAGTGAAA-ATGATCGGCCATTCTCTTGAGGATTCTCGCTTCCTCACTTTGCTA-- 1433
|||||| ||||| | ||||||||| ||||| |||| |||| ||| |||||||||||||
Sbjct 1365 ACTAGATTGAAAGA-GATCGGCCACTCTCTAGAGGGTTCTTGCTCCCTCACTTTGCTATG 1423
Query 1434 --CT-CT--GAAATGATATTGGTTATCAGGAAACTTCCAG-GAGCTATCGAATCCGATTT 1487
|| || ||| |||||| |||||||||||| ||| ||| || |||||||||| ||| |
Sbjct 1424 AGCTGCTCTGAATTGATATGGGTTATCAGGAA-CTTTCAGTGA-CTATCGAATCTGATCT 1481
Query 1488 CAATTCGCTCGAGTTCATGGCTTGATTATTCAAAGGACAATGCATACTCCTGaaaaaaaG 1547
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1482 CAACTCGCTCGAGTTCATGGCTTGATTATTCAAAGGACAATGCATACTCCTGAATAA--G 1539
Query 1548 TACATGCTCACTTCTCGTTGTGCATCTTGGAGGCGGAAGACATCTACCAATGCCACTGCC 1607
|||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 1540 C-CATGCTCACTTCTCGTTGTGCATCTTGG-G----AAGACATCTACCAATGCCATTGCC 1593
Query 1608 TTCGTTTCCATGTCTCTGCCTT-TAC-T--GCCTGAT-AGATTTGCT-GAGCAAATTGGT 1661
||||||||||||||||||||| || | || ||| | || | | | | | |||||
Sbjct 1594 TTCGTTTCCATGTCTCTGCCTGATAGATTTGC-TGAGCAAATGTAATTG-G-ACTTTGGT 1650
Query 1662 TCTTAAAAGTCAAGTGT-ATGTTCCAAC----A---GTAACTACTAGTTTGGGATGTTAC 1713
||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||
Sbjct 1651 TCTAAAAAGTCAAGTGCCATGTTCCAACTTCCAACTGTAACTACTAGTTAGGGATGTTAC 1710
Query 1714 GTGGGCCGAGCCAGGCCGGCCAGTAGCCCGTTTTGGCAACTTTTATGCTAGGCCGATCCA 1773
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1711 GTGGGCCGAGCCAGGCCGGCTAGTAGCCCGTTTTGGCAACTTTTATGCTAGGCCGATTCA 1770
Query 1774 TCTGTTCCGTGATCCATC 1791
||||||||||||||||||
Sbjct 1771 TCTGTTCCGTGATCCATC 1788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90160178820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5