BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476559
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1303 0.0
AT1G69543.1 | Symbols: | Pseudogene of AT1G74220 | chr1:261484... 357 1e-97
AT1G69550.1 | Symbols: | disease resistance protein (TIR-NBS-L... 357 1e-97
> AT1G74220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte,
flower, pollen tube; EXPRESSED DURING: L mature pollen stage,
M germinated pollen stage, 4 anthesis; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G03630.1);
Has 383 Blast hits to 347 proteins in 86 species: Archae
- 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses
- 2; Other Eukaryotes - 136 (source: NCBI BLink). | chr1:27913099-27914134
REVERSE LENGTH=951
Length=951
Score = 1303 bits (705), Expect = 0.0
Identities = 895/981 (91%), Gaps = 36/981 (4%)
Strand=Plus/Plus
Query 1 ATGGAATCATCTCAAGAACAAAGtttttttAACCCCACGAACCAAAGCTCGAAAAACCTA 60
||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||| ||
Sbjct 1 ATGGAATCATCACAAGAACAAAGTTTCTTTAGCCCCACGAACCAAAGCTCGAGAAACTTA 60
Query 61 GCTTCTAAACCTGAGACAGAAGATCCAATC-TCAAGActttcttcttcttcttcctcttc 119
|| ||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 61 GCATCTAAACCTGAAACAGAAGATCCAATCAT-AAGACTTTCTTCTTCGTCTTCCTCTTC 119
Query 120 ttgttcttcCATAGAAGCCGAACCAAGACCTGATCAGAATC-TAA--ACAACAATGTAGA 176
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 120 TTGTTCTTCCATAGAAGCCGAACCAAGACCTGATCAGAATCACAACCACAACAATGTAGA 179
Query 177 GCAATCTCCTCCGACACAGGTCATGGAAAGATCCacaaacaacacaacaacaacaacaac 236
|||||||||||||||||| ||||||||||||| ||||| |||||| ||||||||
Sbjct 180 GCAATCTCCTCCGACACAAGTCATGGAAAGAT-------CAACA-AACAAC-ACAACAAC 230
Query 237 aacaacGACTTCGAGCCCTAATACACCTCCTTACAGAATCCCTTCACATGTTTTCGCAAG 296
||| ||||| || | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 231 AACGACGACCTCTACCCCTAATACACCTCCTTACAGAATCCCTTCACATGTTTTCGCGAG 290
Query 297 AACAACCTCTACAGCTCCAGAATGGAGCACTATGTCCAATGAATCTCTTTTCAGCATCCA 356
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 291 AACAACCTCTACAGCTCCAGAATGGAGTACTATCTCCAATGAATCTCTTTTCAGCATCCA 350
Query 357 CATGGGTAACAATAGCTTCACGGGTGGAGATTATTTCAAATCCGGCGAGCTCACGTTTCC 416
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 351 TATGGGTAACAATAGCTTCACCGGTGGAGATTATTTCAAATCCGGCGAACTCACGTTTCC 410
Query 417 TCAGCCTCCTTCACCAATAACTCCTCCTTTGCCTTCGCCTTTACCATCCCCTCCCCACAA 476
|||||||||||||||||||||| ||||||||||||| ||||||||||| | ||||||||
Sbjct 411 TCAGCCTCCTTCACCAATAACTTCTCCTTTGCCTTCTCCTTTACCATCTACGCCCCACAA 470
Query 477 CGCGAACCAAGGAGGAGCCGTAGGACCTGCGGCTGAGGTAAAAACTCCGGTGGATATAGG 536
|| |||||||||||||||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 471 CGTGAACCAAGGAGGAGCCGTAGGAGCTGCTGCGGAGGTAAAAACTCCGGTGGATATAGG 530
Query 537 CAAGAAAGCAGCTGAAACAGATAAAGCTTACCGCGCAAGTAAAGAAGACGAGCAAAAAGC 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 531 CAAGAAAGCAGCTGAAACAGATAAAGCTTACCGCGCAAGTAAAGAAGACGAACAAAAAGC 590
Query 597 TGCAGCAAGTATAAGAGAGGTTATCATGGCTAATGAAGCAGCTAACAAAGACAACAACAA 656
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 591 TGCAGCAAGTATAAGAGAGGTTATCATGGCTAATGAAGCTGCTAACAA---CAACAACAA 647
Query 657 TAACAACAATACCAAAACCAATAAACTGGATCGTTCTGTTTCTCGTCGCTCAGAAGATTT 716
||| ||||| || | || | |||||||||||||||||||||||||| ||||
Sbjct 648 -AAC--CAATA--AA--C---TA----G-ATCGTTCTGTTTCTCGTCGCTCAGAAAATTT 692
Query 717 AAGCCTCAAGTCTTTCGCTTTTCCAGTATTGGGGAATGCAGACAAAGGCGGGTTACAAGG 776
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 693 AAGTGTCAAGTCTTTCGCTTTTCCAGTAATGGGGAATGCAGACAAAGGCGGGTTACAAGG 752
Query 777 TTCCACGCCTCAAAAGAAGCAG-GGAAAGCCTTCGCAGCCAGAGACACCGCAGATTTCGA 835
|||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||| |
Sbjct 753 TTCCACGCCTGAAAAGAAGCAGAGGAAT-CCTTCGCAGCCAGAGACACCGAAGATTTCCA 811
Query 836 CTGAAACTGAAAGAGATGAAGGATTGAAGAAAGAGGAAGCTCCTAAATCAGTAGCTCCTA 895
||||| ||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 812 CTGAAGCTGAAGGAGATGTAGGATTGAAGAAAGAGGAAGCTCCTAAACCAGTAGCTCCTA 871
Query 896 AAGCAGAAGCGGAACGTGCTTCTAATCGCAACCCCAACTGGCTCTCTTGCTTCCCTTGTT 955
|| |||||||||| ||||| ||| ||||||||||||| |||||||||||||||||||| |
Sbjct 872 AAACAGAAGCGGACCGTGCCTCTGATCGCAACCCCAAATGGCTCTCTTGCTTCCCTTGCT 931
Query 956 GCACAACCTTCT-GTGTCTAA 975
| ||||||| || ||||||||
Sbjct 932 GTACAACCT-CTTGTGTCTAA 951
> AT1G69543.1 | Symbols: | Pseudogene of AT1G74220 | chr1:26148437-26148781
FORWARD LENGTH=345
Length=345
Score = 357 bits (193), Expect = 1e-97
Identities = 273/308 (89%), Gaps = 20/308 (6%)
Strand=Plus/Plus
Query 77 CAG-AAGATCCAATCTCAAGActttcttcttcttcttcctcttcttgttcttcCATAGAA 135
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4 CAGCAAGATCCAATCTCAAGACTTTCTTCTTCTTCTTCCTCTTCTTATTCTTCCATAGAA 63
Query 136 G-C-CGAACCAAGACCTGATCAGAATCTAAACAACAATGTAGAGCAATCTCCTCCGACAC 193
| | |||||||||||||||||||| ||| || |||||||||||||||| || ||||||||
Sbjct 64 GCCGCGAACCAAGACCTGATCAGATTCT-AA-AACAATGTAGAGCAATATCTTCCGACAC 121
Query 194 AGGTCATGGAAAGATCCacaaacaacacaacaacaacaacaacaacaacGACTTCGAGCC 253
| ||||||||||||| | | || |||||| |||||||| | || ||| |||||||
Sbjct 122 AAGTCATGGAAAGAT---C---C-AC-TAACAAC-ACAACAAC-A-AA-GACCTCGAGCC 169
Query 254 CTAATACACCTCCTTACAGAATCCCTTCACATGTTTTCGCAAGAACAACCTCTACAGCTC 313
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 CTAATAAACCTCCTTACAGAATCCCTTCACATGTTTTCGCAAGAACAACCTCTACAGCTC 229
Query 314 CAG---AATGGAGCACTATGTCCAATGAATCTCTTTTCAGCATCCACATGGGTAACAATA 370
||| ||||||||| | | |||||||||||||||||||| ||||| || ||||| ||||
Sbjct 230 CAGTTGAATGGAGCATTGTCTCCAATGAATCTCTTTTCAGTATCCATATTGGTAATAATA 289
Query 371 GCTTCACG 378
||||||||
Sbjct 290 GCTTCACG 297
> AT1G69550.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class) | chr1:26148021-26153555 REVERSE LENGTH=5199
Length=5199
Score = 357 bits (193), Expect = 1e-97
Identities = 273/308 (89%), Gaps = 20/308 (6%)
Strand=Plus/Minus
Query 77 CAG-AAGATCCAATCTCAAGActttcttcttcttcttcctcttcttgttcttcCATAGAA 135
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4780 CAGCAAGATCCAATCTCAAGACTTTCTTCTTCTTCTTCCTCTTCTTATTCTTCCATAGAA 4721
Query 136 G-C-CGAACCAAGACCTGATCAGAATCTAAACAACAATGTAGAGCAATCTCCTCCGACAC 193
| | |||||||||||||||||||| ||| || |||||||||||||||| || ||||||||
Sbjct 4720 GCCGCGAACCAAGACCTGATCAGATTCT-AA-AACAATGTAGAGCAATATCTTCCGACAC 4663
Query 194 AGGTCATGGAAAGATCCacaaacaacacaacaacaacaacaacaacaacGACTTCGAGCC 253
| ||||||||||||| | | || |||||| |||||||| | || ||| |||||||
Sbjct 4662 AAGTCATGGAAAGAT---C---C-AC-TAACAAC-ACAACAAC-A-AA-GACCTCGAGCC 4615
Query 254 CTAATACACCTCCTTACAGAATCCCTTCACATGTTTTCGCAAGAACAACCTCTACAGCTC 313
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4614 CTAATAAACCTCCTTACAGAATCCCTTCACATGTTTTCGCAAGAACAACCTCTACAGCTC 4555
Query 314 CAG---AATGGAGCACTATGTCCAATGAATCTCTTTTCAGCATCCACATGGGTAACAATA 370
||| ||||||||| | | |||||||||||||||||||| ||||| || ||||| ||||
Sbjct 4554 CAGTTGAATGGAGCATTGTCTCCAATGAATCTCTTTTCAGTATCCATATTGGTAATAATA 4495
Query 371 GCTTCACG 378
||||||||
Sbjct 4494 GCTTCACG 4487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5