BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476560
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding prote... 1528 0.0
> AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein
5 | chr1:27914699-27917083 FORWARD LENGTH=1172
Length=1172
Score = 1528 bits (827), Expect = 0.0
Identities = 1002/1083 (93%), Gaps = 25/1083 (2%)
Strand=Plus/Plus
Query 1 GAGAATTGAAAGACGCTTC--CAGAG--AGATCATCTCCGTTAAACCCTAGAGATTGGAA 56
||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 1 GAGAATTGAAAGACGCTTCGAGAGAGATAGATCATCTCCGTTAAACCCTAGCGATTGGAA 60
Query 57 TACAGATATACACCAAATGGCTTTCTTAAGTAAAGTTGGAAGGATATTTAGTCAGACCAG 116
||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 61 TACGGATATACTCCAAATGGCTTTCTTAAGTAAAGTTGGAAGGTTATTCAGTCAGACCAG 120
Query 117 CAGCCATGTCGCTGCCTCTAGCTCAATGCTTCAGAGCATCCGCTGCATGTCCTCATCAAA 176
|||||||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 121 CAGCCATGTCACTGCCTCTAGCTCGATGCTACAGAGCATCCGTTGCATGTCTTCATCAAA 180
Query 177 AATCTTTGTTGGAGGTATCTCCTACAGCACTGATGAGTTTGGCTTAAGAGAAGCTTTTGG 236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AATCTTTGTTGGAGGTATCTCCTACAGCACTGATGAGTTTGGCTTAAGAGAAGCTTTTAG 240
Query 237 CAAATATGGAGAAGTTGTTGATGCAAAGATTATTGTGGACCGTGAAACAGGCAGATCTAG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAATATGGAGAAGTTGTTGATGCAAAGATTATTGTGGACCGTGAAACAGGCAGATCTAG 300
Query 297 GGGTTTTGCTTTTGTAACATTTACTTCCACTGAGGAGGCTAGTAATGCCATGCAATTGGA 356
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GGGCTTTGCTTTCGTAACATTTACTTCGACTGAGGAGGCTAGTAATGCCATGCAATTGGA 360
Query 357 TGGACAGGACCTTCATGGTCGAAGAATTAGGGTGAATTATGCAACTGAAAGAGGAAGTGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGACAGGACCTTCATGGTCGAAGAATTAGGGTGAATTATGCAACTGAAAGAGGAAGTGG 420
Query 417 ATTTGGAGGAAGGGGATTCggtggtcctggtggtggttacggtgcttcagacggtggtta 476
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 421 GTTTGGAGGAAGGGGATTCGGTGGTCCTGGTGGTGGTTATGGTGCTTCAGATGGTGGTTA 480
Query 477 tggtgctccagctggtggttatggtAC-TCCAGCTGGTGGTTATGGAGGCAACTCTTCGT 535
|||||||||||||||||||||||| | | || |||||||| |||||||||||||| |
Sbjct 481 TGGTGCTCCAGCTGGTGGTTATGG-AGGTGGTGCCGGTGGTTACGGAGGCAACTCTTCTT 539
Query 536 ATGGTGGAAATGCtgggggtggtggtggttatggcggtaactcttcctatggtggaaatg 595
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 ATAGTGGAAATGCTGGGGGTGGTGGTGGTTATGGTGGTAACTCTTCCTATGGTGGAAATG 599
Query 596 ctgggggtggtggtggttatggAGGTAACCCTCCTTATACTGGCAATGCTGTtggtggtg 655
|||| |||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 600 CTGG---TGGT--T----ATGGAGGTAACCCTCCTTATAGTGGCAATGCTGTTGGTGGTG 650
Query 656 gtggtggttatggaagcaatcttggcagtggtggcggatatggtgttgcgggtggtgTTG 715
| ||||| |||||||||||| ||||| | || || |||||||||||||| ||||||||||
Sbjct 651 GCGGTGGCTATGGAAGCAATTTTGGCGGCGGCGGTGGATATGGTGTTGCAGGTGGTGTTG 710
Query 716 GTGGAAGTGACAACTTTGCCCAAGGCAGTTCCTCAAATGCTGGCTTTGATAACAAGTTTG 775
|||||||||| ||||||||||||||||| ||| | ||||||||||||||| |||||||||
Sbjct 711 GTGGAAGTGAAAACTTTGCCCAAGGCAGCTCCACTAATGCTGGCTTTGATGACAAGTTTG 770
Query 776 -GCAGCAACCAACCATTAGGCAATGATACGGATCATCAG-CTTGAAAGCGGATTCGGCGG 833
| |||||||||||||||||||||||||||||||||||| || |||||||| || || ||
Sbjct 771 AG-AGCAACCAACCATTAGGCAATGATACGGATCATCAGACT-GAAAGCGGTTTGGGAGG 828
Query 834 CGATGAACAATTTGGTGGCAGTGACAATCAATTTGGTGATGCAGAGAACGGTAAAAGAGA 893
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 829 CGATGAACAATTTGGTGGCAGTGACAATCAATTTGGAGATGCAGAGAACGGTAACACAGA 888
Query 894 GAATGGTCCAGATGGGTTTGATCAGACTGACGATGGCGATGTTGCCAAGAGAGCCTAGTC 953
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 889 GAATGGTCCAGTTGGGTTTGATCAAACTGACGATGGCGATGTTGCCAAGAGAGCCTAGTC 948
Query 954 TCCACGATGT-GTCTCCGTGTACGTTTGCGTCCTGGAACTTTTGTTTTGCGGTTTCAGTC 1012
|||||||||| || ||||||| |||| |||| ||||||||||||||||| |||||||||
Sbjct 949 TCCACGATGTTGTG-CCGTGTATGTTTACGTCATGGAACTTTTGTTTTGCAGTTTCAGTC 1007
Query 1013 TAAA-CTTATGGAAGTTTCTTAATCTCT--ATTTAACGTTTGAGGTTGTTTATCATGTAG 1069
|||| |||| | || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1008 TAAAACTTACG-AACTTTCTTAATCTCTCTATTTAACGTTTGAGGTTGTTTATCATGTAG 1066
Query 1070 AGA 1072
|||
Sbjct 1067 AGA 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5