BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476564

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74270.1 | Symbols:  | Ribosomal protein L35Ae family protei...   926    0.0  


> AT1G74270.1 | Symbols:  | Ribosomal protein L35Ae family protein 
| chr1:27928171-27929497 REVERSE LENGTH=614
Length=614

 Score =  926 bits (501),  Expect = 0.0
 Identities = 536/553 (97%), Gaps = 2/553 (0%)
 Strand=Plus/Plus

Query  1    AGCAGACTTTGGATATTCGGCGGAATCGAAAATGGTGAAGGGACGCCAAGGAGAACGAGT  60
            ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    AGCAGCCTTTGGATATTCGGCGGAATCGAAAATGGTCAAGGGACGCCAAGGAGAACGAGT  60

Query  61   CAGACTCTACGTGAGAGGAACCATCCTCGGATACAAAAGGTCAAAGTCTAACCAGTATCC  120
            ||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct  61   CAGACTCTACGTGAGGGGAACCATCCTCGGATACAAAAGGTCGAAGTCCAACCAGTATCC  120

Query  121  CAACACGTCCCTCGTCCAGATCGAAGGAGTTAACACTCAGGAGGAGGTAAACTGGTACAA  180
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AAACACGTCCCTCGTCCAGATCGAAGGAGTTAACACTCAGGAGGAGGTAAACTGGTACAA  180

Query  181  GGGAAAGAGGATGGCTTACATCTACAAGGCTAAGACAAAGAAGAACGGTAGCCACTACCG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGGAAAGAGGATGGCTTACATCTACAAGGCTAAGACAAAGAAGAACGGTAGCCACTACCG  240

Query  241  CTGCATCTGGGGAAAGGTTACCAGGCCTCACGGTAACAGCGGTGTTGTCCGTGCCAAATT  300
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CTGTATCTGGGGAAAGGTTACCAGGCCTCACGGTAACAGCGGTGTTGTCCGTGCCAAATT  300

Query  301  CACATCCAACCTGCCTCCTAAGTCCATGGGAAGCAGGGTGAGAGTCTTCATGTATCCGAG  360
            |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct  301  CACATCCAACCTTCCTCCCAAGTCCATGGGAAGCAGAGTGAGAGTCTTCATGTATCCGAG  360

Query  361  TAACATATGAAGCAAATGCAAAA-TGGCTTAAACTTATAATTTAGCCGCCTTGGTTTTGT  419
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  361  TAACATATGAAGCAA-TGCAAAAATGGCTTAAACTTATAATTTAGCCGCCTTGGTTTTGT  419

Query  420  TCACTAGTTTGTTATTTTGTATTTTGATATTGAAAGCATTTCCTTTCTTTGTTTGAAGTG  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  TCACTAGTTTGTTATTTTGTATTTTGATATTGAAAGCATTTCCTTTCTTTGTTTGAAGTG  479

Query  480  TTTGGAGATTCTCTAAATTGACTTTGCTCATGGATCTGGTTTTTCATCACAAATTAGAAT  539
            |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |
Sbjct  480  TTTGGAGATTCTCTAAATTGACTTTGATCATGGATCCGGTTTTTCATCCCAAATTAGACT  539

Query  540  CCTTTTTCCCCTT  552
            || ||||||||||
Sbjct  540  CCCTTTTCCCCTT  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5