BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476570
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74370.1 | Symbols: | RING/U-box superfamily protein | chr1... 1561 0.0
> AT1G74370.1 | Symbols: | RING/U-box superfamily protein | chr1:27958086-27959366
REVERSE LENGTH=1125
Length=1125
Score = 1561 bits (845), Expect = 0.0
Identities = 1043/1135 (92%), Gaps = 28/1135 (2%)
Strand=Plus/Plus
Query 1 GGCGGAAACATTGAAAGGCGTTTCAGAGTCACCATCTTTTACGACGCGTGTCTCTTTTTC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 GGCGGAAACATTGAAAGGCGTTTCAGAGTCACCATGTTTTACGACGCGTGTCTCTTTTTC 60
Query 61 AG-CGGTTTTC-TCGTCGCTACTTACATCAGAGCTTC-G-GAT-TTATATATCTCAACGA 115
|| |||||||| || ||||| ||||||||||||||| | ||| ||||||| ||||||||
Sbjct 61 AGCCGGTTTTCTTC-TCGCTGGTTACATCAGAGCTTCGGAGATATTATATAACTCAACGA 119
Query 116 CGTCGCTGTT-CCTTTAtttttttttCCAATGACCTTCATCTTCATGACCGGATAAACTC 174
||| |||||| | ||| ||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 120 CGTAGCTGTTGCATTT-TTTGTTTTTGCAATGATCTTCATCTTCATGACCGGATAAACTC 178
Query 175 TTGCAAAGAAAGATTCAAAAGTGATTATCTTTGTGGTGGA-CGCCTCCATTGTTATGTGG 233
|| | |||||||||| |||||||||||| || | ||||| | ||||||||| |||||||
Sbjct 179 TT--AGAGAAAGATTC-AAAGTGATTATC-TT-T-GTGGATC-CCTCCATTGCTATGTGG 231
Query 234 AATTTAGCTTCAAAATCGATCAAAGAAGGCTTTAAATCACAA-GGAGAAGAAGCTGCTAC 292
|||||||||||||||||||||| |||||| |||| ||| || |||||||||||||||||
Sbjct 232 AATTTAGCTTCAAAATCGATCAGAGAAGGTTTTATATC-GAAGGGAGAAGAAGCTGCTAC 290
Query 293 AAAACAAAGAAAATC-ACCTTCAGATTCATCAGGAGATGGAAGAAGGACAACGAAGGAAG 351
||||| ||||| | | | ||| |||| ||||||||||||||||| |||||| |||||||
Sbjct 291 AAAACCAAGAAGAGCTA-CTTTAGATAGATCAGGAGATGGAAGAAAGACAACAAAGGAAG 349
Query 352 AAAAATTGGAGTGTCCCATTTGTTGGGAATCATTCAACGTCGTTGAGAATGTACCTTATG 411
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 350 AAAAATTGGAGTGTCCCATTTGCTGGGAATCATTCAACGTTGTTGAGAATGTACCTTATG 409
Query 412 TCTTATGGTGTGGTCATACAATCTGCAAGTACTGTCTCTTAGGGCTTCAACGTGCCGTTG 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 410 TCTTATGGTGTGGTCATACAATCTGCAAGTACTGTCTCTTAGGGCTTCAACGTGCCATTG 469
Query 472 TCATCAAATCCTCAGCTTTACCTTTCCAGCTTCCCTTCTTCGTTGCTTGCCCTTGGTGCA 531
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 470 TCATCAAATCCTCTGCTTTACCATTCCAGCTTCCCTTCTTCGTTGCTTGCCCTTGGTGCA 529
Query 532 ATATACTCTCTTTAAGGCTGGTTTGCAATGGAACCGTCA-AGTTTCCTTCCAAGAACTTT 590
|||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 530 ATATTCTCTCTTTAAGGCTGGTTTGCAATGGAACCATCAGA-TTTCCTTCCAAGAACTTT 588
Query 591 TACCTTCTATGGATGGTCGAAAGCATGAATGGCTGCAGATCTGAAGCGCGCAGCGACAAC 650
|||||||| |||||||| |||||||||||||||| |||||| || || | ||||||||||
Sbjct 589 TACCTTCTGTGGATGGTAGAAAGCATGAATGGCTCCAGATCGGAGGCACCCAGCGACAAC 648
Query 651 AAAAGAGTCACTTCAGGGCA------CTTGAGAAAGAGGTGTGATGGAGTGAGTAATACC 704
||||| || |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 649 AAAAGGGTTGCTTCAGGGCAGAGAGACTTGAGAAATAGGTGTGATGGAGTGAGTAATACC 708
Query 705 GCCTCGGATGATGAACGGTTACTGGACAATCGCAGCTGGTGGAATGGTCTGACCAGAGGA 764
|||| || ||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 709 GCCTTGGGTGATGAAGGGTTGCTGGACAATCGCAGCTGGTGGAATGGTGTGACCAGAGGA 768
Query 765 TTCTTCAGAACTGGGAGACTCCATGACTCGGTATGTAAGTCAATGGCTCTTGTTGCTCAT 824
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 769 TTCTTCAGAACTGGGAGGCTCCATGACTCGGTACGTAAGTCAATGGCTCTTGTTGCTCAT 828
Query 825 TTGCTGTCTAAGTTTCCTTTGGTAGTCATATTCCTGTTGATGGCTTTATATGCAATCCCT 884
||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTGTTGGCTAAGTTTCCTCTGGTAGTCATATTCCTGTTGATGGCTTTATATGCAATCCCT 888
Query 885 GTGAGTGCTGCAGTTCTTGGGCTTTATTTCTTTGTCACGTTTGCTTTGGCTGTCCCGTCT 944
||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 889 GTGAGTGCTGCAGTTCTCGGGGTTTATTTCTTTGTTACGTTTGCTTTGGCTGTCCCGTCG 948
Query 945 TTTCTCGTCCTCTATTTCGCCTTCCCGAGCTTAAACTGGCTGATCAGAGAGATTGCAGCC 1004
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 949 TTTCTCGTCCTTTATTTTGCCTTCCCGAGCTTAAACTGGCTGATCAGAGAGATTGCAACC 1008
Query 1005 TGACTCATTGTACTGTTTCTTTCTTCCTTTATGTTTCCTGACTTGTAAGAAACTTGAGAT 1064
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1009 TGACTCATTGTACTGTTTCTTTCTTCCTGTATGTTTCCTGACTTGTAAGAAACACGAGAT 1068
Query 1065 AGAGCCAAAGATGTTTACATTCAATATAGACAAGAAGAAGAGAAGATCTTTATTT 1119
|||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1069 AGAGCCAACGTTGTTTACACTCAATATAGACAAGAAGAAGAGAAGATCTTTATTT 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5