BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476572
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74390.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 2207 0.0
> AT1G74390.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr1:27961537-27963847 REVERSE
LENGTH=1765
Length=1765
Score = 2207 bits (1195), Expect = 0.0
Identities = 1429/1540 (93%), Gaps = 24/1540 (2%)
Strand=Plus/Plus
Query 1 AACAATGGCTTCGACTCTGGGCGGCGATGAGAGAAGCGAGATAGCGTTTTTTGACCTAGA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 18 AACAATGGCTTCGAGTCTGGGCGGCGATGAGAGAAGCGAGATAGCGTTTTTCGACCTTGA 77
Query 61 GACGGCGGTTCCGACCAAATC-GGGACAGCCTTTTGCGATTTTGGAGTTTGGGGCTATCT 119
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||
Sbjct 78 GACGGCGGTTCCGACCAAATCAGGG-GAGCCTTTCGCGATTTTGGAGTTTGGGGCCATCT 136
Query 120 TAGTTTGCCCTAGGAAGCTAGTGGAGCTCTATAGTTACTCCACTTTGGTTCGACCAACCG 179
|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 137 TAGTTTGCCCAAGGAGGCTAGAGGAGCTCTATAGTTACTCCACTTTGGTTCGACCTACTG 196
Query 180 ATCTTT-CTCTCATCTCAACGCTCACGAAGCGACGTAGCGGCATTACGCGCGACGGAGTC 238
|||||| || | ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 197 ATCTTTCCT-TAATCTCTACGCTCACAAAGCGACGTAGCGGCATTACGCGCGACGGAGTT 255
Query 239 CTCTCAGCACCTACATTCTCTGAAGTCGCCGATGAGGTCTACGACATTCTTCATGGACGA 298
||||| |||| ||||||||||||| |||||||| ||||||| ||||||||||| ||||||
Sbjct 256 CTCTCTGCACATACATTCTCTGAAATCGCCGATAAGGTCTATGACATTCTTCACGGACGA 315
Query 299 ATTTGGGCGGGACATAACATAAAGAGATTCGATTGTGTAAGAATAAGAGATGCATTTGCA 358
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 316 ATTTGGGCGGGACATAACATAATTCGATTCGATTGTGTAAGAATAAGAGAAGCATTTGCA 375
Query 359 GAAATTGGTCTCTCTCCGCCAGAGCCGAAAGCTACAATTGATTCGCTTTCATTGTTGTCT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GAAATTGGTCTCTCTCCGCCAGAGCCGAAAGCTACAATTGATTCGCTTTCATTGTTGTCT 435
Query 419 CAGAAGTTTGGGAAGAGAGCTGGTGACATGAAGATGGCATCACTTGCTACATACTTCGGG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CAGAAGTTTGGGAAGAGAGCTGGTGACATGAAGATGGCATCACTTGCTACATACTTCGGG 495
Query 479 CTAGGAGATCAAGCTCACAGGAGCTTAGATGATGTCCGGATGAATCTTGAAGTTGTCAAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTAGGAGATCAAGCTCACAGGAGCTTAGATGATGTCCGGATGAATCTTGAAGTTGTCAAG 555
Query 539 TACTGTGCAACCGTCTTGTTTCTGGAGTCCAGTGTCCCTGACATTCTTACAGACATGAGC 598
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 556 TACTGTGCAACCGTCTTGTTTCTGGAGTCCAGTGTTCCTGACATTCTTACAGACATGAGC 615
Query 599 TGGTTTTCCCCACGAAAAAGTCCGAGAACACGACGAAGTAATGAGAAGTCAGTG-CGTGA 657
||||||||||||||||||||||| ||||||||| | |||||| ||||| |||| | | |
Sbjct 616 TGGTTTTCCCCACGAAAAAGTCCCAGAACACGA--A-GTAATGGGAAGTTAGTGGC-TAA 671
Query 658 TGGAGTCAGAGAAAGCTCGACTTCTTCCTCCTCGAGTCCTAAAACTGATCCGAGTTTGTC 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 672 TGGAGTCAGAGAAAGCTCGACTTCTTCCTCCTCGAGTCCTAAAACTGATCCGAGTTCCTC 731
Query 718 TTCCGTGGATGCCACAATCGTCAAAAACCATCCCATCATTTCTCTTCTGACGGAATGCTC 777
||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 732 TTCCGTGGACGCCACAATCGTCAAAAACCATCCCATCGTTTCTCTTCTTACGGAATGCTC 791
Query 778 AGAAAGTGATACATCTAGTTGCGAAATAGA---TCCA-TCTGATATAACCACTTTAATTA 833
|||||||||| |||| |||| || ||||| |||| | |||||||||||||||||| |
Sbjct 792 AGAAAGTGATGCATCAAGTTATGATATAGAAGATCCAAT-TGATATAACCACTTTAAT-A 849
Query 834 G-TAAACTACATATTGGAACTCTTCAGACGGATGCTGCAGACGAAGCGAAAACTGTAAGA 892
| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 850 GGTAAACTACGTATTGGAACTCTTCAGACGGATGCTGCAGAAGAAGCGAAAACTGTAAGA 909
Query 893 CAGCAGGATGAATCACCTCCATCACCCGATCCCGATGC-AAAGGAGGAATCATTTTTGGG 951
|||||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||
Sbjct 910 CAGCAGGATGAATCACCTCCATCACCCGATTCCGATGCCAAAG-ATGAATCATTTTTGGG 968
Query 952 TGTTAATGAAGTATCTGTTTCTAGCATCAGGGCAAGTCTTATCCCGTTTTACCATGGGAG 1011
|||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 969 TGTTAATGAAGTATCTGTTTCTAGCATCAGGGCAAGTCTTGTCCCGTTTTATCGTGGGAG 1028
Query 1012 CCTGAAAATGAAGCTGTTTCACAACGACACCCCTCTACATCTGTGTTGGTATAGCTTAAA 1071
| ||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 1029 CTTGAGAATGAAGCTATTTCACAACGACACCCCTCTGCATCTGTGTTGGCATAGCTTGAA 1088
Query 1072 AATTCGGTTTGGAATAAGCCGGAAGTTTTTGGATCATGCAGGTCATCCAAGGTTGAATAT 1131
| ||||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 1089 AGTTCGGTTCGGAATAAGCCGGAAGTTTGTGGATCATGCAGGTCGTCCAAAGTTGAATAT 1148
Query 1132 TGTTGTCGACATACCTCCTGATTTATGCAAGATCTTGGACGCAGCTGATGCTGCTGCGCA 1191
| |||| ||| |||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1149 TATTGTTGACGCCCCTCTTGATCTATGCAAGATCTTGGACGCAGTTGATGCTGCTGCGCA 1208
Query 1192 TAACTTACCAATTGAGTCAAGCACAAACTCAGATTGGAGGCCCACTGTTATAAGGAAAGA 1251
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1209 CAACTTACCAACTGACTCAAGCACAAACTCAGATTGGAGACCCACTGTTATAAGGAAAGA 1268
Query 1252 GGGCTTTGCCAACTATCCCACAGCCAGACTGCAAATAAGCTCAGAATCCAATGGGGATGA 1311
|||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 1269 AGGCTTTGCCAACTATCCCACAGCCAGACTGCATATAAGCTCAGAATCCAACGGAGATGA 1328
Query 1312 TGCCCGGTGTGGAAC-CAAGGTATATCAAAAAGAAGAACCTTTGGAAACCAATCAAAAGC 1370
| ||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1329 TACCCTGTGTGGAACGCA-GGTATATCAAAAAGAAGAACCTTTGGGAACCAATCAAAAGC 1387
Query 1371 TCGATTTCAGTAGCGATAACTTTGAAAAGCTTGAGTCAGCATTACTTCCCGGTACCCTGG 1430
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1388 TCGATGTCAGTAGCGATAACTTGGAAAAGCTTGAGTCAGCATTACTTCCCGGTACTCTGG 1447
Query 1431 TTGATGCATTCTTCTCACTCGAGCCTTAC-GATTATCAGAAAATGGCAGGGGTACGTCTA 1489
||||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||
Sbjct 1448 TTGATGCATTCTTCTCACTCGAGCCTTACAG-TTATCAGCAAATGGCAGGGATACGTCTA 1506
Query 1490 ACAGCCAGAAAGTTGGTAATCCACCTGAAGAAA-TGATCT 1528
||| || ||||||||| |||| |||||| ||| ||||||
Sbjct 1507 GCAGTCAAAAAGTTGGTGATCCTCCTGAA-AAAGTGATCT 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77710443660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5