BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476577
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74430.1 | Symbols: MYB95, ATMYB95, ATMYBCP66 | myb domain p... 1472 0.0
AT1G74440.1 | Symbols: | Protein of unknown function (DUF962) ... 418 7e-116
AT3G13890.1 | Symbols: MYB26, ATMYB26, MS35 | myb domain protei... 69.4 8e-11
> AT1G74430.1 | Symbols: MYB95, ATMYB95, ATMYBCP66 | myb domain
protein 95 | chr1:27975179-27977434 FORWARD LENGTH=1362
Length=1362
Score = 1472 bits (797), Expect = 0.0
Identities = 897/944 (95%), Gaps = 11/944 (1%)
Strand=Plus/Plus
Query 113 AAGACTTGAATCGACCGGAGAAGAGATACGTGTCGAGATCTGATTAGCTCACCGGAGAGA 172
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 159 AAGACTTGAATCGACCGGAGAAGAGATACGTGTAGAGATCTGATTGGCTCACCGGAGAGA 218
Query 173 ACAAAACAATAAAATGGGGAGGACGACGTGGTTCGACGTTGACGGGTTGAGGAAAGGAGA 232
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 ACAAAACAA-GAAATGGGGAGGACGACGTGGTTCGACGTTGACGGGTTGAGGAAAGGAGA 277
Query 233 GTGGACGGCGGAGGAAGACCGGAAGCTCGTGGTTTACATCAACGAACACGGTCTCGGCGA 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 278 GTGGACGGCGGAGGAAGACCGGAAGCTCGTGGTTTACATCAACGAACACGGTCTAGGCGA 337
Query 293 GTGGGGTTCACTGCCTAAGAAAGCCGGTCTGCAAAGATGTGGAAAGAGTTGTAGATTAAG 352
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 338 GTGGGGTTCACTGCCTAAGAGAGCCGGTCTACAAAGATGTGGAAAGAGTTGTAGATTAAG 397
Query 353 ATGGCTGAATTATTTGAGGCCTGGGATTAAAAGAGGCAAATTCACTCCTCAGGAGGAAGA 412
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 398 ATGGCTGAATTATTTGAGGCCTGGGATTAAAAGAGGCAAGTTCACTCCTCAGGAAGAAGA 457
Query 413 AGAAATCATCAAATACCATGCTCTTCTTGGAAACAGGTGGGCAGCAATAGCTAAGCAAAT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AGAAATCATCAAATACCATGCTCTTCTTGGAAACAGGTGGGCAGCAATAGCTAAGCAAAT 517
Query 473 GCCAAGCAGAACAGACAATGACATAAAGAACCATTGGAACTCATGTCTTAAGAAAAGACT 532
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 518 GCCAAACAGAACAGATAATGACATAAAGAACCATTGGAACTCATGCCTTAAGAAAAGACT 577
Query 533 TGCTAAAAAAGGAATCGATCCAATGACCCATGAGCCAACAACAACAA---GCCTCACCGT 589
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 578 TGCTAAAAAAGGAATCGATCCAATGACCCATGAGCCAACAACAACAACAAGCCTCACCGT 637
Query 590 CGATGTCACCTCCTCATCAACTACGTCGTCTCCTACACCGAGCCCTACTTCTTCTTCTGT 649
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 638 CGATGTCACCTCCTCATCAACTACGTCGTCTCCTACACCGAGCCCTACTTCTTCTTCTTT 697
Query 650 TTCCTCCTCTTCATCCACTGGCTCTGCACGTTTCCTTAACAAGCTCGCTGCTGGAATCTC 709
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TTCCTCCTGTTCCTCTACTGGCTCTGCACGTTTCCTTAACAAGCTCGCTGCTGGAATCTC 757
Query 710 GTCGAGAAAACACGGACTTGAGAGTATCAAGACAGTGATATTGTCAGAACAACCAAGAGA 769
||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 758 GTCAAGAAAACACGGACTAGAGAGTATCAAGACAGTGATATTGGCAGAACAACCAAGAGA 817
Query 770 AGCCGTTGATGAAGAGAAGATGATGA---T-AAGCATGGAAGAAAAGGAATTGATTAGTT 825
|||||||||||||||||||||||||| | || |||| |||| ||||||||||||||||
Sbjct 818 AGCCGTTGATGAAGAGAAGATGATGACAATTAA-CATGAAAGAGAAGGAATTGATTAGTT 876
Query 826 GTTTCATGGAGATTGATGAGACGCTGAGTATTGATGAACTATTTTGTGATGACTCGACGT 885
||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 877 GTTACATGGAGATTGATGAGACGATGAGTATTGATGAACTACCTTGTGATGACTCGACGT 936
Query 886 CTGGCTTCGTGGCTTTTGATGACTACTCATTAACCGATCCATACAGATACAGTGTGTACG 945
||||||||||||||||||| ||||||||||||| ||| ||||||||| || |||||||||
Sbjct 937 CTGGCTTCGTGGCTTTTGACGACTACTCATTAATCGACCCATACAGAGACGGTGTGTACG 996
Query 946 AATCTGATTTCTATGATGAGACTGAACAGCTTGACCTGTTCCTCCTTTGAATCACATCTC 1005
|||||||||||| |||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct 997 TATCTGATTTCTACGATGAGACTGAACACCTTGACCTGTTCCTTCTTTGAATCACATTTC 1056
Query 1006 -TTTGTCTAA-TAAACCCATTTCTTTAGTGTGACGAGAGAGAGA 1047
||||||||| |||| || |||||||||||||||||||||||||
Sbjct 1057 CTTTGTCTAAATAAATCCGTTTCTTTAGTGTGACGAGAGAGAGA 1100
Score = 163 bits (88), Expect = 3e-39
Identities = 110/120 (92%), Gaps = 4/120 (3%)
Strand=Plus/Plus
Query 1 AAAAGACCATTCTACTTC--TATATATATA-AGTGTGAGTGAGAGAAAGCCTCACATAAA 57
|||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||||
Sbjct 3 AAAAGACCATTCTACTTCTATATATATATATAGTGTGAGTGAGACAGAGCCTCACATAAA 62
Query 58 TAAAAAGTCTCCTATTCTGAATAAAATTATTATTAACAATAATTCACTTATCTTAAAGAC 117
|||||||||||||| |||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct 63 TAAAAAGTCTCCTAATCTGAATACAACTATTACTAACAATAATTCACTTATCT-AAAGAC 121
> AT1G74440.1 | Symbols: | Protein of unknown function (DUF962)
| chr1:27976502-27980404 REVERSE LENGTH=1202
Length=1202
Score = 418 bits (226), Expect = 7e-116
Identities = 248/258 (96%), Gaps = 3/258 (1%)
Strand=Plus/Minus
Query 447 AGGTGGGCAGCAATAGCTAAGCAAATGCCAAGCAGAACAGACAATGACATAAAGAACCAT 506
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1140 AGGTGGGCAGCAATAGCTAAGCAAATGCCAAACAGAACAGATAATGACATAAAGAACCAT 1081
Query 507 TGGAACTCATGTCTTAAGAAAAGACTTGCTAAAAAAGGAATCGATCCAATGACCCATGAG 566
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGAACTCATGCCTTAAGAAAAGACTTGCTAAAAAAGGAATCGATCCAATGACCCATGAG 1021
Query 567 -C--CAACAACAACAAGCCTCACCGTCGATGTCACCTCCTCATCAACTACGTCGTCTCCT 623
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCAACAACAACAACAAGCCTCACCGTCGATGTCACCTCCTCATCAACTACGTCGTCTCCT 961
Query 624 ACACCGAGCCCTACTTCTTCTTCTGTTTCCTCCTCTTCATCCACTGGCTCTGCACGTTTC 683
|||||||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||
Sbjct 960 ACACCGAGCCCTACTTCTTCTTCTTTTTCCTCCTGTTCCTCTACTGGCTCTGCACGTTTC 901
Query 684 CTTAACAAGCTCGCTGCT 701
||||||||||||||||||
Sbjct 900 CTTAACAAGCTCGCTGCT 883
Score = 255 bits (138), Expect = 6e-67
Identities = 167/181 (92%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 869 TTGTGATGACTCGACGTCTGGCTTCGTGGCTTTTGATGACTACTCATTAACCGATCCATA 928
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 883 TTGTGATGACTCGACGTCTGGCTTCGTGGCTTTTGACGACTACTCATTAATCGACCCATA 824
Query 929 CAGATACAGTGTGTACGAATCTGATTTCTATGATGAGACTGAACAGCTTGACCTGTTCCT 988
|||| || ||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 823 CAGAGACGGTGTGTACGTATCTGATTTCTACGATGAGACTGAACACCTTGACCTGTTCCT 764
Query 989 CCTTTGAATCACATCTC-TTTGTCTAA-TAAACCCATTTCTTTAGTGTGACGAGAGAGAG 1046
||||||||||||| || ||||||||| |||| || ||||||||||||||||||||||||
Sbjct 763 TCTTTGAATCACATTTCCTTTGTCTAAATAAATCCGTTTCTTTAGTGTGACGAGAGAGAG 704
Query 1047 A 1047
|
Sbjct 703 A 703
> AT3G13890.1 | Symbols: MYB26, ATMYB26, MS35 | myb domain protein
26 | chr3:4576744-4578027 REVERSE LENGTH=1104
Length=1104
Score = 69.4 bits (37), Expect = 8e-11
Identities = 68/83 (82%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 322 TGCAAAGATGTGGAAAGAGTTGTAGATTAAGATGGCTGAATTATTTGAGGCCTGGGATTA 381
|||| |||||||||||||||||||||||||||||| | |||||| | || |||| |||
Sbjct 164 TGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTA 223
Query 382 AAAGAGGCAAA-TTCACTCCTCA 403
|| | || || ||| |||||||
Sbjct 224 AACGTGG-AAGCTTCTCTCCTCA 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5