BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476585

Length=572
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G74500.1 | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI...   737    0.0  


> AT1G74500.1 | Symbols: ATBS1, TMO7, BS1 | activation-tagged BRI1(brassinosteroid-insensitive 
1)-suppressor 1 | chr1:27998175-27998821 
REVERSE LENGTH=558
Length=558

 Score =  737 bits (399),  Expect = 0.0
 Identities = 526/581 (91%), Gaps = 33/581 (6%)
 Strand=Plus/Plus

Query  1    ATACTATCAACTCTTCTC--TC---C-CTCTCTCTTCCTTTTCCGGCATAACTTGTGTGT  54
            |||||||||||| |||||  ||   | |||||||||| |||||||||||||||| |||||
Sbjct  1    ATACTATCAACTTTTCTCTATCTATCTCTCTCTCTTCTTTTTCCGGCATAACTTCTGTGT  60

Query  55   TACCCTAAACTCCATATCCTGTTTCATCGATAAATTAAAGTGCCTTTGCTACTAATATCT  114
            |||||||||||||||| ||||||||| ||    | ||||||||||||||| || || |||
Sbjct  61   TACCCTAAACTCCATAACCTGTTTCACCG----A-TAAAGTGCCTTTGCTTCT-ATCTCT  114

Query  115  ATCACTCTTACTACTTGTCGAATAATAATTCAACaaaaaaaaaaaaTGTCGGGAAGAAGA  174
             ||||||||||||||||| ||| ||| |||| ||     |||||||||||||||||||||
Sbjct  115  GTCACTCTTACTACTTGTTGAACAAT-ATTCTAC-----AAAAAAATGTCGGGAAGAAGA  168

Query  175  TCACGTTCGAGGCAATCATCAGGAACTTCAAGGATCTCAGAAGATCAAATCAATGATCTC  234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  169  TCACGTTCGAGGCAATCATCAGGAACTTCAAGGATCTCAGAAGATCAAATCAATGATCTG  228

Query  235  ATTATCAAGTTGCAACAGCTTCTTCCTGAGCTCAGGGACAGTCGTCGCTCCGACAAGGTT  294
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  229  ATTATCAAGTTGCAACAGCTTCTTCCTGAGCTCAGGGACAGTCGTCGTTCCGACAAGGTT  288

Query  295  TCAGCAGCGAGGGTGTTACAAGATACGTGCAACTACATAAGGAATCTGCATAGAGAGGTT  354
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  289  TCAGCAGCGAGGGTGTTACAAGATACGTGCAACTACATACGGAATCTGCATAGAGAGGTT  348

Query  355  GATGATCTAAGTGAGAGGTTATCTGAGTTACTTGCAAACACAGACACTGCACAAGCTGCT  414
            |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct  349  GATGATCTAAGTGAGAGGCTATCTGAGTTACTAGCAAACTCAGACACTGCACAAGCTGCT  408

Query  415  TTAATCAGAAGCTTACTTACCCAATAATTCCTATCTTTTTGttcttcttcttcttcttct  474
            |||||||||||||||||||||||||||||||||||| |     ||| || | ||||||||
Sbjct  409  TTAATCAGAAGCTTACTTACCCAATAATTCCTATCTAT-----CTT-TT-T-CTTCTTCT  460

Query  475  tcttTTTTATTGTTTACTataataataataataataGTTTGCGGATTGATTTTTCTATAG  534
            |||||||| ||||||||||||||||||||||||   |||||||| ||  |||||||||||
Sbjct  461  TCTTTTTT-TTGTTTACTATAATAATAATAATA---GTTTGCGGGTTTTTTTTTCTATAG  516

Query  535  ATG---ATGACCTTATAAACGTTGAATGATACGAGTTCGTC  572
            |||   ||||||||||||||||| |||||||||||||||||
Sbjct  517  ATGTTGATGACCTTATAAACGTTTAATGATACGAGTTCGTC  557



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27478078409


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5