BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476586
Length=1843
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74510.2 | Symbols: | Galactose oxidase/kelch repeat superf... 2163 0.0
> AT1G74510.2 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:28005551-28007739 FORWARD LENGTH=2189
Length=2189
Score = 2163 bits (1171), Expect = 0.0
Identities = 1345/1428 (94%), Gaps = 15/1428 (1%)
Strand=Plus/Plus
Query 229 GCATTCATTATGTTGGAGGCTCCGAGTTATCTGGTGTCAAGGGACTTACCATCTTCATGT 288
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GCATCCATCATGTTGGAGGCTCCGAGTTATCTGGTGTCAAGGGACTTACCATCTTCATGT 565
Query 289 GAGGAAGAGAGCAAGTGGATATATAACGCACACTGTGTGCTTCAGCTCTCCTTGAA-GAA 347
||||||||||||||||||||||| || |||||||||||||||||||||||| | || |||
Sbjct 566 GAGGAAGAGAGCAAGTGGATATACAATGCACACTGTGTGCTTCAGCTCTCCCT-AAGGAA 624
Query 348 ACGGTTT-TTGGATGCTACCGATGAAGAAGGAAGCTCCGCTAAGAAACTGTTGCGCGTTG 406
| |||| ||||||| ||| |||| ||||||||| |||||||||||| |||| || ||||
Sbjct 625 GC-GTTTGTTGGATGATACTGATGTAGAAGGAAGTTCCGCTAAGAAAATGTTACGGGTTG 683
Query 407 ATCATGGAAGCAGAGGTGAATCTGAGAAGATTACAGATATTCTTCAGCTTGCTAAAACCT 466
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 684 ATCATGGAAGCAGAGGTGAATCTGACAAGATTACAGATAGTCTTCAGCTTGCTAAAACCT 743
Query 467 ATCAGAGGTCTAACCAGAGTCAACAA------GGTGGTGATCAACAGAGTTCACCGGTTA 520
||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 744 ATCAGAGCTCTAACCAGAGTCAACAAGGTGGTGGTGGTGATCAACAGAGTTCACCAGTTA 803
Query 521 CTCGGCTTGACCAAAACGCACTTCTCAACTGCTTGGCTCACTGTTCGTTGTCTGATTTCG 580
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 804 CTCGGCTTGACCAAAACGCGCTTCTCAACTGCTTGGCTCACTGTTCGTTATCTGATTTCG 863
Query 581 GGTCTATAGCCTCTACGAATAAAACCTTCCGCTCGTTGATTAAGGACAGCGAGTTGTATA 640
|||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 864 GGTCTATAGCGTCGACGAATAGAACCTTCCGCTCGTTGATTAAGGACAGCGAGTTGTATA 923
Query 641 GGTTGAGACGGGCAAAGGGTATTGTGGAGCATTGGATTTACTTCTCTTGCAGGCTCTTGG 700
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 924 GGTTGAGACGGGCAAAGGGTATTGTGGAGCATTGGATTTACTTCTCTTGCAGGCTCTTAG 983
Query 701 AATGGGAAGCTTATGATCCAAATGGAGATCGCTGGTTACGTGTACCGAAAATGACATTTA 760
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 984 AATGGGAGGCTTATGATCCTAATGGAGATCGCTGGTTACGTGTACCGAAAATGACATTCA 1043
Query 761 ATGAATGTTTTATGTGTTCGGATAAAGAGTCTCTGGCGGTTGGCACCGAGCTTCTTGTTT 820
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 ACGAGTGTTTCATGTGTTCGGATAAAGAGTCTCTGGCGGTTGGCACCGAGCTTCTTGTTT 1103
Query 821 TTGGTAAAGAGATCATGTCCCATGTGATTTACCGATATAGTATCTTGACCAATACATGGA 880
| || |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 1104 TCGGAAAAGAGATCATGTCTCATGTGATTTACCGATATAGCATCTTAACCAATACATGGA 1163
Query 881 CATCGGGTATGCAAATGAATGTCCCGAGGTGCTTGTTTGGATCAGCGAGTCTAGGCGAGA 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CATCGGGTATGCAAATGAATGTCCCGAGGTGCTTGTTTGGATCAGCGAGTCTAGGCGAGA 1223
Query 941 TCGCGGTTATAGCTGGAGGATGTGATCCTCATGGGCGGATATTGAGCTCGGCAGAGCTTT 1000
|||||||||||||||||||||||||||| | |||| ||||| |||| || ||||||||||
Sbjct 1224 TCGCGGTTATAGCTGGAGGATGTGATCCGCGTGGGAGGATACTGAGTTCTGCAGAGCTTT 1283
Query 1001 ATAACTCGGAAACTGGGGAATGGACGGTCATCCCGAGCATGAACAAAGCTAGGAAAATGT 1060
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1284 ATAACTCTGAAACTGGGGAATGGACGGTCATCCCGAGCATGAACAAAGCGAGGAAAATGT 1343
Query 1061 GCTCTAGCGTGTTCATGGACGGGAATTTCTATTGCATTGGAGGTATCGGAGAGGGAAACT 1120
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GCTCGAGCGTGTTCATGGATGGGAATTTCTATTGCATTGGAGGTATCGGAGAGGGAAACT 1403
Query 1121 CGAAGATGCTAATGTGCGGTGAAGTCTATGATCTGAAGAAGAAGACATGGACATTGATAC 1180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 CGAAGATGCTATTGTGCGGTGAAGTCTATGATCTGAAGAAGAAGACATGGACATTGATAC 1463
Query 1181 CTAACATGTTACCAGAAAGAAGCAACGGAGGTGGAGGAGATCAGGCAACGGAGATTGCCG 1240
||||||||||||| |||||||||| ||||||||||||||||| |||| |||||||| |
Sbjct 1464 CTAACATGTTACCTGAAAGAAGCAGTGGAGGTGGAGGAGATCAAGCAAAAGAGATTGCTG 1523
Query 1241 CTGCAACAGCGGCCTCAGAGGCTCCACCGCTTGTAGCAGTTGTAAAAGACGAGCTATATG 1300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1524 CTGCAACAGCGGCTTCAGAGGCTCCACCGCTTGTAGCAGTTGTAAAAGACGAGCTTTATG 1583
Query 1301 CTGCAAATTACGCGCAGCAAGAAGT-AAGGAAATACGATAAAAGGCGTAATGTATGGAAT 1359
|||| ||||||||||||||||| || ||| |||||||||||||||| |||||||||||||
Sbjct 1584 CTGCGAATTACGCGCAGCAAGAGGTGAAG-AAATACGATAAAAGGCTTAATGTATGGAAT 1642
Query 1360 AAAGTAGGGAATTTGCCAGAGAGGGCTTCTTCGATGAACGGTTGGGGAATGGCGTTTCGA 1419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1643 AAGGTAGGGAATTTGCCAGAGAGGGCTTCTTCGATGAACGGTTGGGGAATGGCGTTTAGG 1702
Query 1420 GCTTGCGGGGATCAGTTAGTGGTGGTTGGAGGACCTAGGGCAATAGGAGGAGGGTTCATA 1479
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1703 GCTTGTGGGGATCAGTTAGTGGTGGTTGGAGGACCTAGGGCAATAGGAGGAGGGTTTATA 1762
Query 1480 GAGATCAATGCTTGTGTCCCAAGCGAAGGAACACAACTGCATTGGAGAGTTCTTGCTTCT 1539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1763 GAGATCAATGCTTGTGTCCCAAGTGAAGGAACACAACTGCATTGGAGAGTTCTTGCTTCT 1822
Query 1540 AAGCCATCGGGAAACTTTGTGTATAATTGTGCGGTGATGGGATGTTGATGAAGAAGACTT 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 AAGCCATCGGGAAACTTTGTGTATAATTGTGCGGTGATGGGATGTTGATGAAGAAGACTT 1882
Query 1600 GAGAG--CCATTTCAAAGTTATTGACtttttttttGGGTTTTATTTTC 1645
||||| ||||||||||||||||||||| ||| || | || ||||||
Sbjct 1883 GAGAGAGCCATTTCAAAGTTATTGACTTCTTTGTTAGACTT-ATTTTC 1929
Score = 320 bits (173), Expect = 3e-86
Identities = 203/217 (94%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 1630 tttGGGTTTTATTTTCATGATTGGGGTCAAGAGAG--TCTCTCTATCTTCTTCTTTGTCT 1687
||||||| || ||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1960 TTTGGGTCTTCGTTTCATGATTGGGGTCAAGAGAGTCTCTCTCTGTTTTCTTCTTTGTCT 2019
Query 1688 TTGTGGGATTATTGTTGTTGTTCAGGTATAATCTGGAACTGAAAA-GTTTCAATAAATTT 1746
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2020 TTGTGGGATTATTGTTGTTGTTCAGGTATAATCTGGAACTGAAAAAGTTTCAATAAATTT 2079
Query 1747 GAAGAAGATTAAGAACAAGCATCATCTTGTCTTGTCTCTCTCAACATTGTTATTTTGTAA 1806
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2080 GAAGAAGGTTAAGAACAAGCATCATGTTGTCTTGTCTCTCTCAACATTGTTATTTTGTAA 2139
Query 1807 TTTGTTTCCATTGTTACACTCTTTTAGAATAAATTTT 1843
|||||||||||||||||| || || | ||||||||||
Sbjct 2140 TTTGTTTCCATTGTTACATTCCTTCAAAATAAATTTT 2176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91214390265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5