BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476588
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74520.1 | Symbols: ATHVA22A, HVA22A | HVA22 homologue A | c... 1153 0.0
> AT1G74520.1 | Symbols: ATHVA22A, HVA22A | HVA22 homologue A |
chr1:28007974-28009300 REVERSE LENGTH=813
Length=813
Score = 1153 bits (624), Expect = 0.0
Identities = 761/823 (92%), Gaps = 26/823 (3%)
Strand=Plus/Plus
Query 2 ATTAAAAAGTTAAAAACTTTCAACAGCTCTACCACACAATTATT-ATTCGctctctc--t 58
|||||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||
Sbjct 6 ATTAAAAAGTTAAAAACTTTCAACAGGTCTACCACACAATCATTCGTTCTCTCTCTCAAA 65
Query 59 ctctctctctc-tctctctGAAAGTCTCCATCTCTATTTTTAGTGTAGGAAGAATCAGAT 117
|||| || | |||| | || || | | | | ||||||||| ||||||||||||||
Sbjct 66 GTCTCAATC-CATCTC-CAGAGAG--T--A-GTGTGTTTTTAGTGGAGGAAGAATCAGAT 118
Query 118 TC-AAAGCCAAAATCAAAGCTTGGTGATGGGATCTGGAGCTGGAAATTTCCTCAAGGTTC 176
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 TCAAAAGCCAAAATCAAAGCTTGGTGATGGGATCTGGAGCTGGCAATTTCCTCAAGGTTC 178
Query 177 TTCTCAGGAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTCTCGTTTATCCTCTATATG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCTCAGGAACTTCGATGTTCTTGCTGGGCCTGTGGTTAGTCTCGTTTATCCTCTATATG 238
Query 237 CTTCAGTCCAAGCGATTGAAACTCAATCTCACGCTGATGACAAACAATGGCTAACTTATT 296
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 CTTCAGTTCAAGCGATTGAAACTCAATCTCATGCTGATGACAAACAATGGCTAACTTATT 298
Query 297 GGGTCCTTTATTCTTTACTTACACTCATCGAGCTCACATTCGCCAAACTCATCGAATGGT 356
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGGTCCTTTATTCATTACTTACACTCATCGAGCTCACATTCGCCAAACTCATCGAATGGT 358
Query 357 TACCGATATGGTCATACATGAAGCTGATCTTGACTTGCTGGCTTGTTATTCCCTACTTTA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TACCGATATGGTCATACATGAAGCTGATCTTGACTTGCTGGCTTGTTATTCCCTACTTTA 418
Query 417 GCGGCGCTGCGTATGTCTATGAACATTTTGTGAGACCTGTGTTTGTTAACCCACGGAGCA 476
| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 419 GTGGCGCTGCTTATGTCTATGAACATTTTGTGAGACCGGTGTTTGTTAACCCTCGGAGCA 478
Query 477 TTAACATTTGGTATGTGCCAAAGAAGATGGATATCTTCAGAAAGCCAGACGATGTGCTAA 536
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 479 TTAACATTTGGTATGTGCCAAAGAAGATGGATATCTTCAGAAAACCAGACGATGTGTTAA 538
Query 537 CAGCTGCAGAGAAGTACATTGCTGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCC 596
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 CAGCTGCTGAGAAGTACATTGCAGAGAATGGACCTGATGCTTTTGAGAAGATCTTAAGCC 598
Query 597 GGGCCGATAAATCAAGAAGATATAA-A--CATGAACATGAAAGCTATGAAACAATGTATG 653
|||| |||||||||| ||||||||| | |||||| |||||||||||||||| |||||||
Sbjct 599 GGGCTGATAAATCAAAAAGATATAATAAGCATGAATATGAAAGCTATGAAACGATGTATG 658
Query 654 GTGAGGGTTATCGGTACTAAGAGAAGAAACTTGAAAA-GCTTTTAATTTTAGAATGTGTG 712
|||||||||||| |||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 659 GTGAGGGTTATCAGTACTAAGAGAA-AT--TTGAAAAAGCTTTTAATTTTAGAATGTGTG 715
Query 713 AAGCAAGCT-CATGTCGTTGTTCTTGTTTGTTTATGCTTCTCTTTTTGTGGATCTCTCTC 771
|||||| || |||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 716 AAGCAA-CTTCATGTCTTTGTT---GTTTGTTTATGCTTC-CTTTTTGTGGATCTCTCTC 770
Query 772 GTGTAAAAAAGTTGATAATTAAA-TCAAGATGCTTTATGCTCC 813
|||||||||||||| |||||||| | |||||||||| ||||||
Sbjct 771 GTGTAAAAAAGTTGCTAATTAAAATAAAGATGCTTTCTGCTCC 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5