BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476589
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74530.3 | Symbols: | unknown protein; Has 35333 Blast hits... 1517 0.0
> AT1G74530.3 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:28009523-28012162
REVERSE LENGTH=1263
Length=1263
Score = 1517 bits (821), Expect = 0.0
Identities = 1033/1130 (91%), Gaps = 36/1130 (3%)
Strand=Plus/Plus
Query 1 AACAGAGCTTGCCGTTAATGGCG-ACAGTCTAATGGAGATTTCCC-GAAAAGCAAGACAA 58
||||||||||| ||||||||| | | || ||||||||| |||||| | ||| ||| ||||
Sbjct 53 AACAGAGCTTGACGTTAATGGAGAAAAGACTAATGGAG-TTTCCCAGGAAA-CAAAACAA 110
Query 59 AAGGAGAAATGGCGACAGCGACGACATCTGCGATTAGGGCACCAAATTGGAGAACTGTTG 118
||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| | ||
Sbjct 111 AAGGAGAAATGGCGACATCGACAACGTCTGCGATTAGGGCACCGAATTGGAGAACCGCTG 170
Query 119 TGTTATTCTGGACTATCTCTCTCACTATTTTCTACTCTCTTTTCCAAATGGGTCTTCGAA 178
|||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 171 TGTTGTTCTGGACCATCTCTCTCACTATCTTCTACTCTCTTTTCCAAATGGGTATTCGAA 230
Query 179 ATTCGCCATCTTCTTCA--T-CATCATCAGATTCCTTTGTCACCTATGCGGAGCAAAGCA 235
|||||||||| ||||| | | |||||||||||||||||| |||||||||||||||| |
Sbjct 231 ATTCGCCATCCACTTCATCTCCTTCATCAGATTCCTTTGTCTCCTATGCGGAGCAAAGTA 290
Query 236 CAAGGTTGTATGATAAGATGGAACGGGATATACAAGAAAACGGA-CCGCTG-TTCTTTAA 293
| |||||||| |||||||||||| |||| |||||||||||||| ||| || ||| ||||
Sbjct 291 CTAGGTTGTACAATAAGATGGAACAGGATTTACAAGAAAACGGACCCG-TGTTTC-TTAA 348
Query 294 ACAAGGTGAAACGTCTCAGTCGTTGTCACTTTCTGATCTCTTTACACTGAAAGATGGAAA 353
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 349 ACAAGGTGAAACGTCTCAGTCATTGTCACTTTCAGATCTCTTCACACTGAAAGATGGAAA 408
Query 354 GATATCACCTGTCCTCAAGGTTGCGAATCCCCCTGTGCGAGCTAATGTATTACATCTCAG 413
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GATAGCACCTGTCCTTAAGGTTGCGAATCCCCCTGTGCGAGCTAATGTATTACATCTCAG 468
Query 414 CACAGAATACTCTGTCCCAGTCTCGAAAGCCGTCGAAAATGTGTTCAGTCCTTACTTTGA 473
||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||| ||
Sbjct 469 CACAGAATACTCTGTCCCAGTCTTGGAAGTCGTAAAAAATGTGTTCAGTCCTTACTTCGA 528
Query 474 GAATACAATCTGGTTTCAGGACTCTAAGATGTATCACTTTAGCATGTTTCATGCATCGAA 533
|||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 529 AAATACAATTTGGTTTCAGGACTCTAAGATGTACCACTTCAGCATGTTTCATGCATCGAA 588
Query 534 TCACATTTTCTCTGTTCCAGCTACTGAAGATGAGGTTGAAGGAGAAGCAGCTGCTGTTAA 593
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 589 TCACATTTTCTCTGTTCCAGCTACTGAAGTTGAGGTTGAAGCAGAAGCAGCTGCTGTTAA 648
Query 594 AGCAGTTGCTAATA-AGCTTTGCCCTTTGGAGATTATCTTGGATAGAGTTCTATTAACCT 652
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AGCAGTTGCTAA-AGAGCTTTGCCCTTTGGAGATTATCTTGGATAGAGTTCTATTAACCT 707
Query 653 CGACCGGTGTTCTTCTTGGATGCTGGAAGGTTAATTCTGGAGATGACCCCATAACAATCC 712
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CGACTGGTGTTCTTCTTGGATGCTGGAAGGTTAATTCTGGAGATGACCCCATAACAATCC 767
Query 713 GCTCGAAACTGAGATATGTTCTTCCACGTGCACCGGAGAAGCAACTTTATGATGCTGCAA 772
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GCTTGAAACTGAGATCTGTTCTTCCACGTGCACCGGAGAAGCAACTTTATGATGCTGCAA 827
Query 773 TTCTTCATACATCATTGGCAAGGCTGCTTGGTCC-----T--C-C-AGCT-AG--T--T- 817
|||||||||||||||||||||| ||||||||||| | | | | || || | |
Sbjct 828 TTCTTCATACATCATTGGCAAGACTGCTTGGTCCACCAATATCTCCAACTGAGGCTGGTT 887
Query 818 CTGACGACCATCTCCAGCTTATCCATGAATTGGTCACAAGACTAAACAACCAAATCCGAG 877
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 888 CTGACGACCATCTCCAGCTTCTCCATGAGTTGGTCACAAGACTAAACAACCAAATCCGAG 947
Query 878 GATTCAGGGCAATAGTATCAGAGCTGTGGTATGTAGAAGAGTTTGATCTGCTGGCGCTTG 937
|||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 948 GATTCAAGGCAATAGTATCAGAACTGTGGTATGTAGAAGAGTTCGATCTGCTGGCGCTCG 1007
Query 938 CATTGGGAGGAAGAATGAAGGTTCGATCATTCCCACTCGGCGGTGCAAAGAGTTAATACT 997
| ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 1008 CCTTGGGAGGAAGAATGAATGTTCGATCATTCCCACTCGGCTGTGCAAAGAGCTAATACT 1067
Query 998 TATTTCATCTTTAAGATCATCAAAACCATTATGTCATCTTCATGTACATTTTCTTCAACT 1057
||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||
Sbjct 1068 TATTTCATCTTTAAGATCATCAAAACCCTAATGTCATCTTCATGTATATTTTCTTCAACT 1127
Query 1058 TCTTAGACTCTTAGTCAAGAAAAATATCTTATTCAAGTCAAGACAAAAGT 1107
|| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TC--A---T---AGTCAAGAAAAATATCTTATTCAAGTCAAGACAAAAGT 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5