BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476592
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74540.1 | Symbols: CYP98A8 | cytochrome P450, family 98, su... 2586 0.0
AT1G74545.1 | Symbols: | Potential natural antisense gene, loc... 431 1e-119
> AT1G74540.1 | Symbols: CYP98A8 | cytochrome P450, family 98,
subfamily A, polypeptide 8 | chr1:28013309-28015049 FORWARD
LENGTH=1741
Length=1741
Score = 2586 bits (1400), Expect = 0.0
Identities = 1602/1701 (94%), Gaps = 8/1701 (0%)
Strand=Plus/Plus
Query 5 TACATC-A-AACT-TATGTTTCACATTGTCGAAGCAAAAATGGTTCTTTATCTAATTTCA 61
|||||| | |||| | |||||||||| ||||||||||||||| || | ||||||||||||
Sbjct 16 TACATCAATAACTGT-TGTTTCACATCGTCGAAGCAAAAATGATTATATATCTAATTTCA 74
Query 62 TTACTCCCTATCATCGTCGCCACCGTCATGCTTTATCAACGGTGGTGGAGATCCAACATA 121
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 75 TTACTCCCTATCATCGTCGCCACCCTCATGCTTTATCAACGATGGTGGAGATCCAACATA 134
Query 122 CCGCCGGGACCAAAGCCAAAGTTTCTGATTGGGAACCTCCACCAAATGAAACCACTTTGG 181
|||||||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||
Sbjct 135 CCGCCGGGACCAAAACCAAAGTTTCTGCTTGGAAACCTTCATCAAATGAAACCACTTTGG 194
Query 182 ACGCATTCTTTCTCGGAGTGGTCACAGACTTATGGTCCTATCATATCTGTGTGGATAGGG 241
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 195 ACGCATTCTTTCTCGGAGTGGTCAGAGACTTATGGTCCTATCATATCGGTGTGGATAGGG 254
Query 242 TCACAGCTCACCGTTGTGGTCTCCAGCTCTGATTTAGCCAGACAAGTGTTGAGAGACAAA 301
||||||||||| || |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 255 TCACAGCTCACTGTCGTGGTCTCGAGCTCTGATCTAGCCAGACAAGTGTTGAGAGACAAA 314
Query 302 GACCATCAATTGTCTAACCGACACAGGATCGCGAGGATGACTCAGACCGGTACTGATCTT 361
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 315 GACCATCAGTTGTCTAACCGACACAGGATCGCAAGGATGACTCAGACCGGTACTGATCTT 374
Query 362 GTTTGGTCTGATTACAGTCCACATTATGTCAAACTGAGGAAACTCTGTACACTCGAACTC 421
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 375 GTTTGGTCCGATTACAGTCCACATTATGTGAAACTGAGGAAACTCTGTACACTCGAGCTC 434
Query 422 TTCTCTCTGAAAAGCATCGAGAATTTCAGGTCGTTGAGAGAGATGGAAGCAAGATCGATG 481
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 435 TTCTCTCTGAAAAGCATCGAAAATTTCAGGTCCTTGAGAGAGATGGAAGCAAGATCGATG 494
Query 482 GTTGTGTCGATTCTCAAGGACTTGATGAGCGATTCAGGCGATGATCAGGAGCGAAAACCG 541
|||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 495 GTTGTGTCGATTCTGAAGGACTTAATGAGCAATTCAGGGGATGATCAGGAGCGAAAACCG 554
Query 542 GTGATTGTGAGGAAGTACCTAGCTGCGGTTGTTTTGAACACCATCTCAAGATTAATGATC 601
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 555 GTGATTGTGAGGAAGTACCTAGCTGCGGTTGTTTTGAATACCATCTCAAGGTTAATGATA 614
Query 602 GGGAAAGAGTTCGGGTCTGAGGAAGGAAAGGAGTTTAAATCAATCGTTGAGAAAGAACAT 661
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 615 GGGAAAGAGTTCGGGTCTGAGGAAGGAAAAGAGTTTAAAGCCATCGTTGAGAAAGAACAT 674
Query 662 CTTCTCAGTGGCTCAGGGACGATTCTCGATCACGTCTGGTGGCTCAAATGGGTTTCGTCT 721
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 675 CTTCTCAGTGGCTCAGGGACGATTCTTGATCACGTCTGGTGGCTCAAATGGGTTTCTTCT 734
Query 722 TGGTTGATTAGCGATAAGGAATTCTTAGCCCACAAGGATCGCAGAACAAAGTGGTTTAGA 781
||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 735 TGGTTCTTTAGTGATAAGGAATTCTTAGCGCACAAGGATCGGAGAACAAAGTGGTTTAGA 794
Query 782 GGAGCTGTAATGGTGGAAGAAGATGTAGCAATAGAGGATCACAGGGGCTTTGTTCGGAAA 841
|||||| | ||||||||||||||| ||| |||||||||||||||||| ||||||||||||
Sbjct 795 GGAGCTATTATGGTGGAAGAAGATATAGAAATAGAGGATCACAGGGGATTTGTTCGGAAA 854
Query 842 TTGTTAGTCTTGAAAGAGCAGAAAGAGCTAAGCGAAGAGACGGTTGGCGGACTAGTCTGG 901
||||| || || ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 855 TTGTTGGTGTTAAAAGAGCAGAAAGAGCTGAGCGAAGAGACGGTTGGGGGACTAGTCTGG 914
Query 902 AACATGTTAACCGCGGGTGCTGACACAACTGCAGTTGTTATCGAATGGGCTATGGCAGAG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AACATGTTAACCGCGGGTGCTGACACAACTGCAGTTGTTATCGAATGGGCTATGGCAGAG 974
Query 962 ATGATCAAATGCCCGGCCGTGCAAGAAAAGGCGCAACAGGAGCTTGATTCCGTGGTTGGA 1021
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 975 ATGATCAAATGCCCGACCGTGCAAGAAAAGGCGCAACAGGAGCTTGATTCTGTGGTTGGA 1034
Query 1022 TCCGAAAGGTTAATGTCTGAATCAGATATCCCGA-ACCTGCCATATCTGCAATGCGTGGT 1080
||||||||||||||| |||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 1035 TCCGAAAGGTTAATGACTGAATCAGATATCCCCATA-CTGCCATATCTGCAATGTGTGGT 1093
Query 1081 TAAAGAAGCTCTCCGTCTTCACCCGTCAACACCATTAATGCTTCCACACAAAGCAAGCGA 1140
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1094 TAAAGAAGCTCTCCGGCTTCACCCGTCAACACCATTAATGCTTCCACACAAAGCAAGTGA 1153
Query 1141 AACAGTTTGGGTAGGTGGGTACAAGGTTCCTAAGGGCGCCACGGTTTATGTCAATGTGCA 1200
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1154 AACTGTTTGGGTAGGTGGGTACAAGGTTCCTAAGGGAGCCACAGTTTATGTCAATGTGCA 1213
Query 1201 GGCGATTGGGCGAGACCCTGCAAACTGGATAAACCCGTATGAGTTTAGACCAGAGCGGTT 1260
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1214 GGCGATTGGGCGGGACCCTGCAAACTGGATAAACCCATATGAGTTCAGACCAGAGCGGTT 1273
Query 1261 CCTTCAGGAGGAAACTGATGTTAAAGGTCGAGACTTTAGGGTTCTTCCGTTCGGATCAGG 1320
||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1274 CCTTCAGGAAGAAACCGATGTTAAAGGTCGAGACTTTAGGGTTCTTCCATTTGGATCAGG 1333
Query 1321 AAGACGGATGTGTCCAGCGGCACAGCTCAGCATGAACTTGATGACATTGGTGATGGGAAA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 AAGACGGATGTGTCCAGCGGCACAGCTCAGCATGAACTTGATGACATTGGTGATGGGAAA 1393
Query 1381 TTTGTTGCATTGCTTCTCATGGAGTTCCCCTATTCCTGGAGAGAGGATTGACATGAGCGA 1440
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1394 TTTGTTGCATTGCTTCTCATGGAGTTCCCCTGTTCCTGGAGAGAGGATTGACATGAGCGA 1453
Query 1441 GAATCCTGGATTGCTTTGTAACATGAGGACTCCACTGCAGGCTCTAGCTTTGCCGAGAGC 1500
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1454 GAATCCTGGATTGCTTTGTAACATGAGGACTCCATTGCAGGCTCTAGCTTTGCCGAGAGC 1513
Query 1501 TGCAGCAAGAGTTATACCTTTACCTTTAGATTAAAATAGATAAATAATCAGACACATAAG 1560
||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1514 TGCCGCAAGAGCAATACCTTTACCTTTAGATTAAAATAGATAAACAATCAGACACATAAG 1573
Query 1561 ATAAAATAATGAAACTCCATAGACCATGATGACTTTCATTATGGAAACGAAGATGCAGCC 1620
|||| ||||| ||| |||||| ||||||| |||| |||| ||||| ||||||||| |||
Sbjct 1574 ATAAGATAATCAAAATCCATATACCATGAAGACTCTCATAATGGACACGAAGATGTAGCT 1633
Query 1621 ATGTCAAACCCAAGAGGCAT-GACAAAATTTGCGACATGGTTGAATACGGTTTCATACAA 1679
|||| ||||||||||||||| | ||| ||||| ||||||||||| || |||||||||||
Sbjct 1634 ATGTAAAACCCAAGAGGCATTG-CAAGATTTGAGACATGGTTGAGTATAGTTTCATACAA 1692
Query 1680 AAACATGTAGCTATTATATAT 1700
||||||||||||||||||||
Sbjct 1693 TAACATGTAGCTATTATATAT 1713
> AT1G74545.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT1G74540 | chr1:28014585-28015482 REVERSE
LENGTH=498
Length=498
Score = 431 bits (233), Expect = 1e-119
Identities = 251/260 (97%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 1264 TCAGGAGGAAACTGATGTTAAAGGTCGAGACTTTAGGGTTCTTCCGTTCGGATCAGGAAG 1323
|||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 498 TCAGGAAGAAACCGATGTTAAAGGTCGAGACTTTAGGGTTCTTCCATTTGGATCAGGAAG 439
Query 1324 ACGGATGTGTCCAGCGGCACAGCTCAGCATGAACTTGATGACATTGGTGATGGGAAATTT 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 ACGGATGTGTCCAGCGGCACAGCTCAGCATGAACTTGATGACATTGGTGATGGGAAATTT 379
Query 1384 GTTGCATTGCTTCTCATGGAGTTCCCCTATTCCTGGAGAGAGGATTGACATGAGCGAGAA 1443
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 378 GTTGCATTGCTTCTCATGGAGTTCCCCTGTTCCTGGAGAGAGGATTGACATGAGCGAGAA 319
Query 1444 TCCTGGATTGCTTTGTAACATGAGGACTCCACTGCAGGCTCTAGCTTTGCCGAGAGCTGC 1503
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 318 TCCTGGATTGCTTTGTAACATGAGGACTCCATTGCAGGCTCTAGCTTTGCCGAGAGCTGC 259
Query 1504 AGCAAGAGTTATACCTTTAC 1523
||||||| ||||||||||
Sbjct 258 CGCAAGAGCAATACCTTTAC 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84035712330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5