BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476596
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74560.3 | Symbols: NRP1 | NAP1-related protein 1 | chr1:280... 1711 0.0
AT1G18800.1 | Symbols: NRP2 | NAP1-related protein 2 | chr1:648... 590 1e-167
AT1G74550.1 | Symbols: CYP98A9 | cytochrome P450, family 98, su... 189 5e-47
> AT1G74560.3 | Symbols: NRP1 | NAP1-related protein 1 | chr1:28017584-28020049
REVERSE LENGTH=1123
Length=1123
Score = 1711 bits (926), Expect = 0.0
Identities = 1065/1130 (94%), Gaps = 17/1130 (2%)
Strand=Plus/Plus
Query 1 ACACTTCACCAGCATAAACTCTCATCAGGAACTAGGGTTTTAGCTGATTCGATTCTCTTG 60
||||||||| |||||||||||||||| ||| ||||||||||||| | ||||||||||
Sbjct 1 ACACTTCACAAGCATAAACTCTCATCGGGAGCTAGGGTTTTAGC----T-GATTCTCTTG 55
Query 61 CGACGGAACCACAAGAGGAGAAGAAACCTAGCA-GAGGAGCCAAAATCCTCTCTTTCTTT 119
||||||||||||||| ||||||| ||| | | ||||||||||||||||||||||||||
Sbjct 56 TGACGGAACCACAAGAAGAGAAGAGACC-AAAAGGAGGAGCCAAAATCCTCTCTTTCTTT 114
Query 120 GGAATTAGGGTTTCCTCTAAGGGAGTGAAGTGAAAATGGTTGCGGATAAGAGCAAGAAGT 179
||||||||||||||||| |||| |||||| |||||||||| ||||| |||||||||||||
Sbjct 115 GGAATTAGGGTTTCCTCAAAGGAAGTGAACTGAAAATGGTCGCGGACAAGAGCAAGAAGT 174
Query 180 CGAAAATTGAAGAGAAAGTCGAAGAAGAAAACTTGGAGCAAATCGATGAAAAGCTTGTTC 239
|||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||||
Sbjct 175 CGAAAATTGAAGAGAAAGGCGAAGAAGAAAACTTGGAGCAAATCGACGCAGAGCTTGTTC 234
Query 240 TCTCAATTGAGAAGCTTCAGGAGATTCAAGATGACCTCGAGAAGATTAATGAAAAGGCCA 299
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 235 TCTCAATTGAGAAGCTTCAGGAGATTCAAGACGACCTCGAGAAGATTAACGAAAAGGCCA 294
Query 300 GTGATGAGGTCTTGGAAGTGGAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACA 359
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTGACGAGGTCTTGGAAGTAGAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACA 354
Query 360 AGCGCAACGAAGTTATCCAGTCGATTCCAGACTTTTGGATGACTGCTTTTTTGAGTCATC 419
||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 355 AGCGCAATGAAGTTATCCAATCGATTCCTGGCTTTTGGATGACTGCTTTTTTGAGTCATC 414
Query 420 CTGCATTAGGTGATCTCTTGACTGAAGAAGACCAAAAGATTTTTAAGTACTTGAACTCTC 479
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTGCCTTAGGCGACCTCTTGACTGAAGAAGACCAAAAGATTTTTAAGTACTTGAACTCTC 474
Query 480 TGGAAGTGGAGGATGCCAAAGATGTGAAATCTGGATACTCTATAACTTTTCACTTCAATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 475 TGGAAGTGGAGGATGCCAAAGATGTGAAATCTGGATACTCTATAACTTTTCACTTCACTT 534
Query 540 CCAACCCGTTCTTTGAGGATGCCAAGCTTACTAAGACGTTTACCTTCCTCGAAGAAGGAA 599
| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct 535 CAAACCCGTTCTTTGAGGATGCCAAGCTTACCAAGACATTTACTTTCCTTGAAGAAGGAA 594
Query 600 CAACAAAAATCACTGCAACTCCTATCAAGTGGAAGGAGGGCAAGGGCTTGCCAAATGGAG 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 595 CAACAAAAATCACTGCAACTCCTATCAAATGGAAGGAGGGCAAGGGCTTGCCAAATGGAG 654
Query 660 TGAACCATGATGATAAGAAAGGAAACAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTT 719
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 655 TGAACCATGATGATAAGAAAGGAAATAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTT 714
Query 720 GGTTTACTGATGCTCAACATAAGGAAGATGCTGGGGATGAGATTCATGATGAGGTTGCTG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GGTTTACTGATGCTCAACATAAGGAAGATGCTGGGGATGAGATTCATGATGAGGTTGCTG 774
Query 780 ATATTATCAAGGAAGATCTGTGGACGCTGATGAAGAGGATTTTGATGGAGATGATGATGG 839
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 775 ATATTATCAAGGAAGATCTCTGGATGCTGATGAAGAGGATTTTGATGGAGATGATGATGG 834
Query 840 TGACGAAGAGGGAGAAGATGACGACGAGGACGACGATGAAGAGGAGGAAGTTGGTGAGGA 899
|||||||||||||||||| | ||||| ||||| |||||||||||||| |||||||||
Sbjct 835 TGACGAAGAGGGAGAAGA--A-GACGATGACGA---TGAAGAGGAGGAAGATGGTGAGGA 888
Query 900 ATGATGGGAGCCCAA-GATAACACATTGCTGGCTTGCTTCTATA---GATGTGTAAAGTT 955
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 889 ATGATGGGAGCCCAAAGATAACACATTGCTGGCTTGCTTCTATAACAGATGTGTAAAGTT 948
Query 956 TGTGTTATGAGGTTCTCAATTTTAGCAATGATGAGACTAAGCTATCTCTTTTGGAATATT 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 949 TGTGTTATGAGGTTCTCAATTTTAGCAATGATGAGACTAAGCTTTCTCTTTTGGAATATT 1008
Query 1016 TAGTTTATTTACTATCAATAGCTACATTCTGTTTGTACGAACCATTTCATCAGCCATGTC 1075
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1009 TAGTTTATTTACTATCAATAGCTACATTCTGTTTGTACGAACCATGTCATCATCCATGTC 1068
Query 1076 CTAAATCTTGCCGCAGCTACATCTGTTTTTCTCAATTGATAATCTCTCTT 1125
|||||||||||| | ||||||||||||||| ||||||| ||||||||||
Sbjct 1069 CTAAATCTTGCCATAACTACATCTGTTTTTCGCAATTGAGAATCTCTCTT 1118
> AT1G18800.1 | Symbols: NRP2 | NAP1-related protein 2 | chr1:6481113-6483596
REVERSE LENGTH=1257
Length=1257
Score = 590 bits (319), Expect = 1e-167
Identities = 516/611 (84%), Gaps = 14/611 (2%)
Strand=Plus/Plus
Query 199 CGAAGAAGAAAACTTGGAGCAAATCGATGAAAAGCTTGTTCTCTCAATTGAGAAGCTTCA 258
||||||||||||| | ||||||||||||| | ||||||| |||||||| || ||||||||
Sbjct 166 CGAAGAAGAAAACGTCGAGCAAATCGATGCAGAGCTTGTCCTCTCAATCGAAAAGCTTCA 225
Query 259 GGAGATTCAAGATGACCTCGAGAAGATTAATGAAAAGGCCAGTGATGAGGTCTTGGAAGT 318
||||| ||||| |||||||||||||| ||||||||||| |||||||| || ||||||||
Sbjct 226 AGAGATCCAAGACGACCTCGAGAAGATAAATGAAAAGGCTAGTGATGAAGTGTTGGAAGT 285
Query 319 GGAGCAGAAATATAACGTGATACGGAAACCTGTCTATGACAAGCGCAACGAAG-TTATCC 377
||||||||||||||| |||||| |||||||||| ||||||||||| |||| || | |||
Sbjct 286 GGAGCAGAAATATAATGTGATAAGGAAACCTGTTTATGACAAGCGTAACG-AGATCATCA 344
Query 378 AGTCGATTCCAGACTTT-TGGATGACTGCTTTTTTGAGTCATCCTGCATTAGGTGATCTC 436
| | || || || ||| ||| | |||||||| |||||||| ||||| |||||||| ||
Sbjct 345 AAACCATCCCTGA-TTTCTGGTTAACTGCTTTCTTGAGTCACCCTGCTTTAGGTGAACTT 403
Query 437 TTGACTGAAGAAGACCAAAAGATTTTTAAGTA-CTTGAACTCTCTGGAAGTGGAGGATGC 495
|||||||||||||||||||||||||| || || ||| | |||||| || || ||||||||
Sbjct 404 TTGACTGAAGAAGACCAAAAGATTTTCAAATATCTT-AGCTCTCTTGATGTTGAGGATGC 462
Query 496 CAAAGATGTGAAATCTGGATACTCTATAACTTTT-CACTTCAATTCCAACCCGTTCTTTG 554
||||||||||||||||||||||||||| |||||| | ||||||| |||| || || ||||
Sbjct 463 CAAAGATGTGAAATCTGGATACTCTATCACTTTTTC-CTTCAATCCCAATCCATTTTTTG 521
Query 555 AGGATGCCAAGCTTACTAAGACGTTTACCTTCCTCGAAGAAGGAACAACAAAAATCACTG 614
| |||| || || || ||||| |||||||| ||||||||||| ||||| |||||||| |
Sbjct 522 AAGATGGAAAACTGACAAAGACTTTTACCTTTCTCGAAGAAGGGACAACCAAAATCACAG 581
Query 615 CAACTCCTATCAAGTGGAAGGAGGGCAAGGGCTTGCCAAATGGAGTGAACCATGATGATA 674
| || |||||||| ||||| |||||||| ||| || | ||||||||||| ||||| || |
Sbjct 582 CCACGCCTATCAAATGGAAAGAGGGCAAAGGCCTGGCGAATGGAGTGAATCATGA-GA-A 639
Query 675 AGAAAGGAAACAAACGTGCATTGCCAGAGGAGAGTTTCTTTACTTGGTTTACTGATGCTC 734
||| ||||||||||||||| | || || ||||| |||||||| ||||||| ||||||||
Sbjct 640 -GAATGGAAACAAACGTGCACTACCTGAAGAGAGCTTCTTTACCTGGTTTAGTGATGCTC 698
Query 735 AACATAAGGAAGATGCTGGGGATGAGATTCATGATGAG--G-TTGCTGATATTATCAAGG 791
|||| ||||| |||| || ||||||||| || || ||| | |||| ||||| |||||||
Sbjct 699 AACACAAGGAGGATGTTGAGGATGAGATGCAAGACGAGCAGGTTGCAGATATCATCAAGG 758
Query 792 AAGATCTGTGG 802
||||| |||||
Sbjct 759 AAGATTTGTGG 769
> AT1G74550.1 | Symbols: CYP98A9 | cytochrome P450, family 98,
subfamily A, polypeptide 9 | chr1:28016045-28017711 FORWARD
LENGTH=1667
Length=1667
Score = 189 bits (102), Expect = 5e-47
Identities = 116/123 (94%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 1003 CTTTTGGAATATTTAGTTTATTTACTATCAATAGCTACATTCTGTTTGTACGAACCATTT 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1667 CTTTTGGAATATTTAGTTTATTTACTATCAATAGCTACATTCTGTTTGTACGAACCATGT 1608
Query 1063 CATCAGCCATGTCCTAAATCTTGCCGCAGCTACATCTGTTTTTCTCAATTGATAATCTCT 1122
||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||||
Sbjct 1607 CATCATCCATGTCCTAAATCTTGCCATAACTACATCTGTTTTTCGCAATTGAGAATCTCT 1548
Query 1123 CTT 1125
|||
Sbjct 1547 CTT 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5