BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476598
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74590.1 | Symbols: ATGSTU10, GSTU10 | glutathione S-transfe... 1386 0.0
> AT1G74590.1 | Symbols: ATGSTU10, GSTU10 | glutathione S-transferase
TAU 10 | chr1:28023627-28024726 REVERSE LENGTH=1019
Length=1019
Score = 1386 bits (750), Expect = 0.0
Identities = 912/988 (92%), Gaps = 19/988 (2%)
Strand=Plus/Plus
Query 1 ATAATCCCCAAAAAGATTTTAAGAAAAAAGTGTAAGAAATAAAACAACAGAGTTTTGAGA 60
|||||||||||| ||||||||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1 ATAATCCCCAAAGAGATTTTAAGAAAAAGGTGTAAGAAAT-AAACAACCGAGTTTTGAGA 59
Query 61 GATGGAGGAGGAGAACAGCAAAGTGATATTACATGGGACGTGGATAAGCCCATACTCAAA 120
||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 TATGGAGGAGAAGAAGAGCAAAGTGATATTACATGGGACGTGGATAAGCACATACTCAAA 119
Query 121 GAGGGTCGAAATCGCCCTTAAACTCAAGGGCATACTATATGAGTACGTCGAAGAAGATCT 180
||||||||||||||| |||||||||||||| |||| || |||||| |||||||||||||
Sbjct 120 GAGGGTCGAAATCGCTCTTAAACTCAAGGGTGTACTCTACGAGTACCTCGAAGAAGATCT 179
Query 181 TCAGAACAAAAGTGAATCGCTGATTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCAGAACAAAAGTGAATCGCTGATTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCT 239
Query 241 TGTCCATGATGGGAAACCAGTGGCTGAATCACTTGTGATTCTTGAATATATCGATGAGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGTCCATGATGGGAAACCAGTGGCTGAATCACTTGTGATTCTTGAATATATCGATGAGAC 299
Query 301 GTGGACGAACTCTCCTCGTTTCTTCCCAGAGGATCCTTATGAAAGGGCTCAGCTCCGGTT 360
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 300 GTGGACAAACTCTCCTCGTTTCTTCCCAGAGGATCCTTATGAAAGGGCCCAGGTCCGGTT 359
Query 361 CTGGGTCAGCTACATCAACCAACAGGTGTTTGAGGTCACGGGTCAAATCATGTTCCAAGA 420
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||
Sbjct 360 CTGGGTCAGCTACATCAACCAACAGGTGTTTGAGGTCATGGGTCAAGTCATGTCCCAGGA 419
Query 421 GGGTGAAGCTCAAGCAAAATCTGTAGAAGAGGCTCGAAAGAGAATCAAAGTTCTTGATGA 480
|||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 420 GGGTGAAGCTCAAGCAAAGTCTGTAGAAGAGGCAAGAAAAAGATTCAAAGTTCTTGATGA 479
Query 481 GGGACTCAAGGAGCATTTCCCGAATAAAAACATCAGAGAG-AATGATGATGTAGGGCTTT 539
|||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 480 GGGACTCAAGAAGCATTTCCCGAATAAAAACATCAGA-AGGAATGATGATGTTGGGCTTT 538
Query 540 TGGAAATCATCATCATTGCTACTTTCGGAGTCCACAAAGCTCATCGTGAAGAAATCGGTG 599
||||||||| ||||||||||||| |||||| | |||||||||||||||||| ||||||||
Sbjct 539 TGGAAATCACCATCATTGCTACTCTCGGAGGCTACAAAGCTCATCGTGAAGCAATCGGTG 598
Query 600 TAGAGATAATTGGTCCAGTGAACACTCAGACTTTATACAACTGGATAGAGCGCCTGCAAG 659
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 TAGACATAATTGGTCCAGTGAACACTCCGACTTTATACAACTGGATAGAGCGCCTGCAAG 658
Query 660 ATCTGAGTGTGATGAAAGAAGTCGAAGTGCCTCATGATAAGTTGGTGA-ACTTAATCCAG 718
|||| |||||||| ||||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 659 ATCTAAGTGTGATAAAAGAAGTCGAAGTGCCTCATGATACGTTGGTGACATTTA-TCCAG 717
Query 719 AACTATAGACAAAAGTGTCTCCAGCAGGCTGCAAATGCGTAATTAGATCAAGATGTTTGT 778
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||
Sbjct 718 AAGTATAGACAAAAGTGTCTCCAGCAGGCTGCAAATGCATAATTAGATCAAGATGCTGGT 777
Query 779 CTAGTGATGAATCATCTGGATTTAATATTGTCTCAGAGGATAACAGCAATCTAGATGAAT 838
||||||||||||||||||||||||||||||||||||||||||| || ||| ||| | |
Sbjct 778 CTAGTGATGAATCATCTGGATTTAATATTGTCTCAGAGGATAATAG-AATA-AGA-G--T 832
Query 839 CATCTAGATTACTGCTTGAAGTAAGAAATAATTCCCTGAGAGTTGTTTATGAAATTATCG 898
| |||| ||| || |||||||||||||||||||||||||||| |||||| ||||||
Sbjct 833 --T--AGATAACTATTTAAAGTAAGAAATAATTCCCTGAGAGTTGTGTATGAACTTATCG 888
Query 899 TATATATTACTGTATGATAATGAACTAAAGAAAAACATTTGTGATATCTCCATGCTCTAT 958
|| |||||||||||||||||||||||||||||| | |||| | ||||||||||||||||
Sbjct 889 TAGCTATTACTGTATGATAATGAACTAAAGAAAACCGTTTGCGGTATCTCCATGCTCTAT 948
Query 959 ACATTAGTTGATACGCTTTGTTGTCATA 986
| |||||||||||||||||| |||
Sbjct 949 A-----GTTGATACGCTTTGTTGTTATA 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48275015267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5