BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476602
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74650.1 | Symbols: ATY13, ATMYB31, MYB31 | myb domain prote... 1945 0.0
> AT1G74650.1 | Symbols: ATY13, ATMYB31, MYB31 | myb domain protein
31 | chr1:28041191-28042995 FORWARD LENGTH=1517
Length=1517
Score = 1945 bits (1053), Expect = 0.0
Identities = 1289/1397 (92%), Gaps = 40/1397 (3%)
Strand=Plus/Plus
Query 1 AAAGAAAGAAAGAAATTAAGGAACACTATTTCAAGTCCAAAGTGAGATTTTGAGAAGACC 60
|||||| |||||||||| |||| |||||||||||||||||| ||||||||||| |||||
Sbjct 78 AAAGAAGGAAAGAAATTGAGGATGACTATTTCAAGTCCAAAGAGAGATTTTGAGTAGACC 137
Query 61 CTCTTTGCAAGAATCCAATCTTAGAGTCTTACTAGTTACTATCTAGCTTACACGCACAGA 120
||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 138 CTCTTCACAAAAATCCAATCTTAGAGTCTTACTAGTTACTATCTAGCTTACATACACAGA 197
Query 121 GACAC--TACTAAAAATCCAATCTTA-AAGAG-CCTTAC----TAG-TT--AC-T----A 164
||||| ||| ||||||||||||||| |||| ||||| ||| || || | |
Sbjct 198 GACACTATACCAAAAATCCAATCTTATTAGAGTACTTACTATATAGCTTACACATACACA 257
Query 165 TATA-G-CTTAC-A---C-AC-A-C-ACA--GTGTGCGTGTGGATATGGTTAGACCACCT 212
| | | ||| | | || | | | | ||||||||| |||||||| ||||||||||
Sbjct 258 CACACGAAGTACTATTTCAACGATCAAGAGCGTGTGCGTGAGGATATGGGTAGACCACCT 317
Query 213 TGTTGCGAGAAGATTGAGGTGAAGAAAGGACCATGGACTCCCGAAGAAGACATAATCTTG 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 TGTTGCGAGAAGATTGAGGTGAAGAAAGGACCATGGACTCCCGAAGAAGACATAATCTTG 377
Query 273 GTCTCTTATATCCAACAACACGGCCCTGGAAACTGGAGATCTGTTCCTGCAAACACCGGT 332
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 378 GTCTCTTATATCCAACAACACGGCCCTGGAAATTGGAGATCTGTCCCTGCAAACACCGGT 437
Query 333 TTGCTAAGGTGTAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTTCGTCCCGGGATC 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 TTGCTAAGGTGTAGCAAGAGTTGCAGACTTAGATGGACTAATTACCTTCGTCCCGGGATC 497
Query 393 AAACGAGGAAATTTCACTCAACCGGAAGAGAAGATGATCATCCACCTTCAAGCTCTTTTG 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 AAACGAGGAAATTTCACTCAACCGGAAGAGAAGATGATCATCCACCTTCAAGCTCTTTTG 557
Query 453 GGTAACAGATGGGCAGCTATAGCATCATATCTACCTCAGAGGACCGACAATGATATCAAG 512
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 GGAAATAGATGGGCAGCTATAGCATCATATCTACCTCAGAGGACCGACAATGATATCAAG 617
Query 513 AACTATTGGAACACTCATCTTAAAAAGAAACTCTTGACGATGAAGCTTCAAAACGGTATC 572
||||| |||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||
Sbjct 618 AACTACTGGAACACTCATCTTAAAAAGAAACTAGTGATGATGAAGTTTCAAAATGGTATC 677
Query 573 ATCAACGGAGACAAAACCAATATGGCGACAGAGATTTCGTCTTGTAATAATAACAACAAT 632
||||||| | ||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 678 ATCAACGAAAACAAAACCAATCTGGCAACAGATATTTCGTCTTGTAATAATAACAACAAT 737
Query 633 GGATGTAATCACAACAAAAGGATCGTCAACAAAGGCCAATGGGAGAAAAAGCTTCAAACA 692
|||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||
Sbjct 738 GGATGTAATCACAACAAAAGGACCACCAACAAAGGCCAATGGGAGAAAAAACTTCAAACA 797
Query 693 GATATCAACATGGCCAAACAAGCGTTATTCCAAGCCTTGTCACTTGACCAACCATCTTCA 752
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 798 GACATCAACATGGCCAAACAAGCCTTATTCCAAGCCTTGTCACTTGACCAACCATCTTCA 857
Query 753 TTGATCCCTCCCGATCCTGACTCACCAAATCGTCATCATCATTCTACCACCACTTATGCC 812
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 858 TTGATCCCTCCCGATCCTGACTCACCAAAACCTCATCATCATTCTACCACCACTTATGCC 917
Query 813 TCAAGCACAGATAACATCTCTAAATTACTCCAGAACTGGACAAGCTCATCAACTTCAAGG 872
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
Sbjct 918 TCAAGCACAGATAACATCTCTAAATTACTCCAGAACTGGACAAGCTCATCATCGTCAAAG 977
Query 873 CCTAACACTTCATCAGTCTCCAA-AACCCGTAGCTCAAGCCCCGGTGAAAGAGGAGTTTT 931
||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| ||||
Sbjct 978 CCTAACACTTCATCAGTCTCCAACAACCGG-AGCTCAAGCCCCGGTGAAGGAGGACTTTT 1036
Query 932 TGATCATCACTCTTTGTTCTCATCGAACTCAGAGTCTGGATCAGTTGATGAGAAGCTGAA 991
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1037 TGATCATCACTCTTTGTTCTCATCGAATTCAGAATCTGGATCAGTTGATGAGAAGCTGAA 1096
Query 992 TTTGATGTCGGAGACAAGCATGTTCAAAGGTGATCAGAGCAAGCCAAACATAGACATGGA 1051
||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1097 TTTGATGTCCGAGACAAGCATGTTCAAAGGTGA---GAGCAAGCCAGACATAGACATGGA 1153
Query 1052 AGctactactactactactactactactGATGATCAAGGCTCGTTGTCTTTGATCGAGAA 1111
|||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1154 AGCTAC-AC--CTACTACTACTACTACTGATGATCAAGGCTCGTTGTCATTGATCGAGAA 1210
Query 1112 ATGGTTGTTTGACGATCAAGGCTTGGCTCAGTGTGATGATAATCAAGAAGATCTCATCGA 1171
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1211 ATGGTTGTTTGATGATCAAGGCTTGGTTCAGTGTGATGATAGTCAAGAAGATCTCATCGA 1270
Query 1172 CGTATCTTTAGAGGGGT-AATAATAATGATTACAACAGTCAAGATTTGTTCTA-A-GAAA 1228
||| |||||||||| || || ||||||||| |||||||||||||||||||||| | ||||
Sbjct 1271 CGTGTCTTTAGAGGAGTTAA-AATAATGATAACAACAGTCAAGATTTGTTCTATAAGAAA 1329
Query 1229 ATAAAACGTATAGAACAATGATATAGCTAGCTAGGtttatttctttttctttcttttgtc 1288
|||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1330 ATAAAACGTATAGAACAACGATAAAGCTAGCTAGGTTTATTAATTTTTCTTTCTTTTGTC 1389
Query 1289 ttttctctatgatctttagttacattttatttcACTGTGTGGCTTGCTTATTGTCAAGTC 1348
|||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 1390 TTTTCTCTATGATCTTTAGTTACATTTTATTTTACTGTGTGGCTTGCTTGTGGTCAAGTC 1449
Query 1349 GATGAAGATCAAACTGT 1365
|||||||||||||||||
Sbjct 1450 GATGAAGATCAAACTGT 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5